RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 IPPQ9Y573 584 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 FAM187AA6NFU0 413 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 ADORA2BP29275 332 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 PEX19P40855 299 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 C15orf59Q2T9L4 293 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 C9orf57Q5W0N0 161 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 KATNAL2Q8IYT4 538 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 GLIS1Q8NBF1 620 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 RNF169Q8NCN4 708 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 BEST2Q8NFU1 509 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 THOC1Q96FV9 657 aaKnown RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 ZNF518BQ9C0D4 1074 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 MIS12Q9H081 205 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 LRCH4O75427 683 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 RARBP10826 455 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 FGFR1P11362 822 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 ETS1P14921 441 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 CCND3P30281 292 aaPredicted RBP12.27□□□□□ -0.44
SHMT2-212ENST00000554467 RABGGTBP53611 331 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 XRCC4Q13426 336 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 CYP1B1Q16678 543 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 SOWAHAQ2M3V2 549 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 KRT71Q3SY84 523 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 PMF1Q6P1K2 205 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 SCUBE3Q8IX30 993 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 SMG8Q8ND04 991 aaKnown RBP12.27□□□□□ -0.44
SHMT2-212ENST00000554467 HSPH1Q92598 858 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 SLITRK1Q96PX8 696 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 CYP3A43Q9HB55 503 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 CDY2AQ9Y6F7 541 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 TLL2Q9Y6L7 1015 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 PASKQ96RG2 1323 aa12.27□□□□□ -0.44
SHMT2-212ENST00000554467 A8MXQ7 604 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 SHBGP04278 402 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 PFKMP08237 780 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 ZSCAN5DPP0CG00 497 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 VDRP11473 427 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 SLC8A3P57103 927 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 ATP11AP98196 1134 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 KLF1Q13351 362 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-212ENST00000554467 KYAT1Q16773 422 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 TRNP1Q6NT89 227 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 TTC30AQ86WT1 665 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 MREGQ8N565 214 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 LHX5Q9H2C1 402 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 SEMA4AQ9H3S1 761 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 LRRC19Q9H756 370 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 NOVA2Q9UNW9 492 aaKnown RBP12.27□□□□□ -0.45
SHMT2-212ENST00000554467 LAMA3Q16787 3333 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 ATP6V1G2O95670 118 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 GBP2P32456 591 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-212ENST00000554467 ELF3P78545 371 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-212ENST00000554467 SREBF2Q12772 1141 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 ZBTB6Q15916 424 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 CNGA2Q16280 664 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 CCDC121Q6ZUS5 278 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 FAM183BPQ6ZVS7 135 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 GSTA5Q7RTV2 222 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 NSMCE1Q8WV22 266 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 LRRC45Q96CN5 670 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 VRTNQ9H8Y1 702 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 DNPEPQ9ULA0 475 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 ZNF236Q9UL36 1845 aa12.27□□□□□ -0.45
SHMT2-212ENST00000554467 SIGLEC16A6NMB1 481 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ENO4A6NNW6 628 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CA12O43570 354 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CYBAP13498 195 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ACAT1P24752 427 aaKnown RBP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ZNF844Q08AG5 666 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 INCA1Q0VD86 236 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CLUL1Q15846 466 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 PPP2R5EQ16537 467 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ALKAL1Q6UXT8 129 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 BZW1Q7L1Q6 419 aaKnown RBP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 EXD1Q8NHP7 514 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CLEC4CQ8WTT0 213 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ATP6V1G3Q96LB4 118 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 EBF2Q9HAK2 575 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ETAA1Q9NY74 926 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 DCDC2CA8MYV0 355 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 H0YGN5 161 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 DUSP11O75319 330 aaKnown RBP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CRYBB1P53674 252 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 PLCB3Q01970 1234 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CACNB2Q08289 660 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 SPOCD1Q6ZMY3 1216 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 ACTR5Q9H9F9 607 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-212ENST00000554467 NOD2Q9HC29 1040 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CNTN3Q9P232 1028 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 STRIP2Q9ULQ0 834 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 NFS1Q9Y697 457 aa12.26□□□□□ -0.45
SHMT2-212ENST00000554467 CHKAP35790 457 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 ADCY8P40145 1251 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 FCGRTP55899 365 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 PIGHQ14442 188 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 FBXO47Q5MNV8 452 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 NDRG1Q92597 394 aaKnown RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 CFAP57Q96MR6 1250 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 KATNAL1Q9BW62 490 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms