RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SETSIPP0DME0 302 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 SKILP12757 684 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 CHRNB2P17787 502 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 HNRNPH3P31942 346 aaKnown RBP12.94□□□□□ -0.34
SHMT2-209ENST00000553949 EPHB3P54753 998 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PDE4CQ08493 712 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 KLHL30Q0D2K2 578 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 VEPH1Q14D04 833 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 SKIV2LQ15477 1246 aaKnown RBP12.94□□□□□ -0.34
SHMT2-209ENST00000553949 TSR1Q2NL82 804 aaKnown RBP12.94□□□□□ -0.34
SHMT2-209ENST00000553949 SYCE2Q6PIF2 218 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 TMC5Q6UXY8 1006 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PIGZQ86VD9 579 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PASD1Q8IV76 773 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 TC2NQ8N9U0 490 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 SLC35F5Q8WV83 523 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 ZNF707Q96C28 371 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-209ENST00000553949 SPATA17Q96L03 361 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 CEP295NLQ96MC4 621 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 AGPAT1Q99943 283 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PRKD2Q9BZL6 878 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 UBXN6Q9BZV1 441 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 LHX5Q9H2C1 402 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PDCL3Q9H2J4 239 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 HAUS4Q9H6D7 363 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 ABHD10Q9NUJ1 306 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 IMPACTQ9P2X3 320 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 BZW2Q9Y6E2 419 aaKnown RBP12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PLXNA3P51805 1871 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 SLC38A8A6NNN8 435 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 HHLA1C9JL84 531 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 TULP2O00295 520 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 XYLBO75191 536 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 SERPING1P05155 500 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 GPD2P43304 727 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 PLA2G4AP47712 749 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 FMO1Q01740 532 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 RARS2Q5T160 578 aaKnown RBP12.93□□□□□ -0.34
SHMT2-209ENST00000553949 HGSNATQ68CP4 663 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 DENND5BQ6ZUT9 1274 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 ZNF571Q7Z3V5 609 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-209ENST00000553949 DNAJB7Q7Z6W7 309 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-209ENST00000553949 ITIH5Q86UX2 942 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 NUP93Q8N1F7 819 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 ELMOD1Q8N336 334 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 WDTC1Q8N5D0 677 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 STKLD1Q8NE28 680 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 FEZF2Q8TBJ5 459 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 PSMG2Q969U7 264 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 MSLNLQ96KJ4 702 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 ZNF512Q96ME7 567 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-209ENST00000553949 SYT11Q9BT88 431 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 APOL5Q9BWW9 433 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 PNPLA8Q9NP80 782 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 ZNHIT6Q9NWK9 470 aaKnown RBP12.93□□□□□ -0.34
SHMT2-209ENST00000553949 ASB3Q9Y575 518 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 CEP83Q9Y592 693 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 REV3LO60673 3130 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 EYSQ5T1H1 3165 aa12.93□□□□□ -0.34
SHMT2-209ENST00000553949 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 GOLGA6L6A8MZA4 724 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 TNFRSF10BO14763 440 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 SLC34A2O95436 690 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 LSM8O95777 96 aaKnown RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 PLEKP08567 350 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 CSH1P0DML2 217 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 CSH2P0DML3 217 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 CDH5P33151 784 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 SLC5A3P53794 718 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 MTMR3Q13615 1198 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 TAF12Q16514 161 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 TDRD12Q587J7 1177 aaKnown RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 PMF1Q6P1K2 205 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 WDR59Q6PJI9 974 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 TRIM72Q6ZMU5 477 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 GPRIN1Q7Z2K8 1008 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 GPR149Q86SP6 731 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 TMEM35BQ8NCS4 154 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 C1orf131Q8NDD1 294 aaKnown RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 MAFAQ8NHW3 353 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 STK32AQ8WU08 396 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 KCTD13Q8WZ19 329 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 SMG7Q92540 1137 aaKnown RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 ANP32BQ92688 251 aaKnown RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 PCDHB18PQ96TA0 734 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 S1PR5Q9H228 398 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 ADAM7Q9H2U9 754 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 UBE2ZQ9H832 354 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 PIDD1Q9HB75 910 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 SEPT11Q9NVA2 429 aaKnown RBP12.92□□□□□ -0.34
SHMT2-209ENST00000553949 ARHGAP20Q9P2F6 1191 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 CYTH4Q9UIA0 394 aa12.92□□□□□ -0.34
SHMT2-209ENST00000553949 CYP1A1P04798 512 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-209ENST00000553949 HMGA1P17096 107 aaKnown RBP12.91□□□□□ -0.34
SHMT2-209ENST00000553949 PTPN2P17706 415 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 TNFAIP3P21580 790 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 KCNA5P22460 613 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 RGS7P49802 495 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 KIF11P52732 1056 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 USP46P62068 366 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms