RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 HESX1Q9UBX0 185 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 PODXLO00592 558 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 CKBP12277 381 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 PNPLA4P41247 253 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 PTK7Q13308 1070 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 OLFML1Q6UWY5 402 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 LIMS2Q7Z4I7 341 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 RPAINQ86UA6 219 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 UNC93AQ86WB7 457 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 C12orf50Q8NA57 414 aaPredicted RBP13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 SENP8Q96LD8 212 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 GLT1D1Q96MS3 346 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 KIAA1257Q9ULG3 409 aa13.4□□□□□ -0.27
VIPAS39-206ENST00000553888 C3orf70A6NLC5 250 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 C2CD4BA6NLJ0 364 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 KRT14P02533 472 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 PDGFRAP16234 1089 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 DSC3Q14574 896 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 CLUL1Q15846 466 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 TTC39CQ8N584 583 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 GLIS1Q8NBF1 620 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 B3GALNT2Q8NCR0 500 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 SLC4A5Q9BY07 1137 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 RAB17Q9H0T7 212 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 CHST12Q9NRB3 414 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 GPATCH2LQ9NWQ4 482 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 WDR35Q9P2L0 1181 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM187AA6NFU0 413 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 ATXN1P54253 815 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 GSCP56915 257 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 PPP1R7Q15435 360 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 TRAF7Q6Q0C0 670 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 B4GALNT4Q76KP1 1039 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 CTU1Q7Z7A3 348 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 RTN4RL1Q86UN2 441 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 CRYBG2Q8N1P7 616 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 RHOBTB2Q9BYZ6 727 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 MAGEB5Q9BZ81 275 aa13.39□□□□□ -0.27
VIPAS39-206ENST00000553888 hCG_1818297A0A087WSY0 165 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 B4GALT3O60512 393 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 RNF40O75150 1001 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ECEL1O95672 775 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ITGB1P05556 798 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 GPD1P21695 349 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 HSD17B3P37058 310 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 CDKN2BP42772 138 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 BRCC3P46736 316 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 AARSP49588 968 aaKnown RBP eCLIP13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 MMRN1Q13201 1228 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 CCDC14Q49A88 953 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 MDH1BQ5I0G3 518 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ARHGAP17Q68EM7 881 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 PAQR9Q6ZVX9 377 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 CYP4V2Q6ZWL3 525 aaPredicted RBP13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 RCOR2Q8IZ40 523 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 FUKQ8N0W3 1084 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 CFHR5Q9BXR6 569 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 RSAD1Q9HA92 442 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM114A2Q9NRY5 505 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 DNPEPQ9ULA0 475 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 TSC2P49815 1807 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ETS1P14921 441 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 GRK4P32298 578 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 FNTAP49354 379 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 NNTQ13423 1086 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 PPP2R5EQ16537 467 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 TIGD5Q53EQ6 642 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ODF2Q5BJF6 829 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ANKRD52Q8NB46 1076 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ZNF784Q8NCA9 323 aaPredicted RBP13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 PXYLP1Q8TE99 480 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ARL8AQ96BM9 186 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 PWWP2AQ96N64 755 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 HMX1Q9NP08 348 aaPredicted RBP13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 CRTAC1Q9NQ79 661 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 STARD7Q9NQZ5 370 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 TMEM30AQ9NV96 361 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 DDX43Q9NXZ2 648 aaKnown RBP13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 RASAL2Q9UJF2 1139 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 USP18Q9UMW8 372 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 ATP8A1Q9Y2Q0 1164 aa13.38□□□□□ -0.27
VIPAS39-206ENST00000553888 TTC3P53804 2025 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 SCN5AQ14524 2016 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 A0A0U1RQF3 1178 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 TP73O15350 636 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 WARSP23381 471 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 YY1P25490 414 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 HSPA9P38646 679 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 ZNF143P52747 638 aaPredicted RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 CACNA2D1P54289 1103 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 PPARDQ03181 441 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 DHX9Q08211 1270 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 BST2Q10589 180 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 TMC3Q7Z5M5 1100 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 MRPL10Q7Z7H8 261 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 TMEM110Q86TL2 294 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 TOP6BLQ8N6T0 577 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 FNIP1Q8TF40 1166 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 UBLCP1Q8WVY7 318 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms