RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PIWIL1Q96J94 861 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 SERAC1Q96JX3 654 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PEBP4Q96S96 227 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PPP1R16BQ96T49 567 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 MRPL4Q9BYD3 311 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 SLC5A4Q9NY91 659 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 DDX56Q9NY93 547 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 XPO7Q9UIA9 1087 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 SUFUQ9UMX1 484 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PCDHGC3Q9UN70 934 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CITO14578 2027 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CEP350Q5VT06 3117 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SCN1AP35498 2009 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 A0A0G2JND7 137 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 NFKBIEO00221 500 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 OGTO15294 1046 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 UPP2O95045 317 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 PAX7P23759 505 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 MIPP30301 263 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ABCD1P33897 745 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ELK3P41970 407 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SLC18A1P54219 525 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ARL4CP56559 192 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 EIF3EP60228 445 aaKnown RBP7.85□□□□□ -1.15
LIMA1-213ENST00000552720 LAMTOR4Q0VGL1 99 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 HSDL1Q3SXM5 330 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 TREML2Q5T2D2 321 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 TRNP1Q6NT89 227 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 RFWD3Q6PCD5 774 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ZPBP2Q6X784 338 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 CEP128Q6ZU80 1094 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 BBS12Q6ZW61 710 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 XYLT1Q86Y38 959 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ATP11CQ8NB49 1132 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 KCTD6Q8NC69 237 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 CAMKK2Q96RR4 588 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 FAM167BQ9BTA0 163 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 DHRS4Q9BTZ2 278 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ACSS3Q9H6R3 686 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SMYD3Q9H7B4 428 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 MINDY3Q9H8M7 445 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 AS3MTQ9HBK9 375 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SENP1Q9P0U3 644 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ZFP69BQ9UJL9 534 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 A0A1B0GUA9 196 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SOWAHBA6NEL2 793 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SIGLEC16A6NMB1 481 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 KBTBD13C9JR72 458 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 GRAP2O75791 330 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 NFICP08651 508 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 IQCF3P0C7M6 154 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 RBP3P10745 1247 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ICAM3P32942 547 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 RFC5P40937 340 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 RAD23BP54727 409 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 CDO1Q16878 200 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 CTC1Q2NKJ3 1217 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 C15orf59Q2T9L4 293 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-213ENST00000552720 KBTBD12Q3ZCT8 623 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 FAXCQ5TGI0 409 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 BZW1Q7L1Q6 419 aaKnown RBP7.85□□□□□ -1.15
LIMA1-213ENST00000552720 POLNQ7Z5Q5 900 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 PRPF39Q86UA1 669 aaKnown RBP7.85□□□□□ -1.15
LIMA1-213ENST00000552720 BANPQ8N9N5 519 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 UBA3Q8TBC4 463 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SPATA18Q8TC71 538 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 C12orf42Q96LP6 360 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 NLRP4Q96MN2 994 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 MIPEPQ99797 713 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 TRIM56Q9BRZ2 755 aaKnown RBP7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF518BQ9C0D4 1074 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SYNCQ9H7C4 482 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 FBXO6Q9NRD1 293 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-213ENST00000552720 BTBD7Q9P203 1132 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 SIX4Q9UIU6 781 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF112Q9UJU3 913 aa7.85□□□□□ -1.15
LIMA1-213ENST00000552720 BRCA1P38398 1863 aaKnown RBP7.84□□□□□ -1.15
LIMA1-213ENST00000552720 TCRBV9S1A1TA0A576 114 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 ZBTB42B2RXF5 422 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 E7ESA3 106 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 INO80B-WBP1J3KQ70 363 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 DCTN3O75935 186 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 ZWINTO95229 277 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 ALDH3A1P30838 453 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 ABL2P42684 1182 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 TAP1Q03518 808 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 FAAP100Q0VG06 881 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 DPYSL3Q14195 570 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 SEPT7Q16181 437 aaKnown RBP7.84□□□□□ -1.15
LIMA1-213ENST00000552720 PARP6Q2NL67 630 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 DCAF15Q66K64 600 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 PPP1R2P3Q6NXS1 205 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 C1orf228Q6PIY5 440 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 CDHR3Q6ZTQ4 885 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 CLNKQ7Z7G1 428 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 SLC4A11Q8NBS3 891 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 KCNN1Q92952 543 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 TTC17Q96AE7 1141 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 FAM111AQ96PZ2 611 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 RAB3IPQ96QF0 476 aaPredicted RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms