RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 C1orf210Q8IVY1 113 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 SNX19Q92543 992 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 EXTL1Q92935 676 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 DVL3Q92997 716 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-205ENST00000550592 CDK5RAP1Q96SZ6 601 aaKnown RBP5.8□□□□□ -1.48
LIMA1-205ENST00000550592 C1QTNF3Q9BXJ4 246 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 ALOXE3Q9BYJ1 711 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 TRIM5Q9C035 493 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 CXorf36Q9H7Y0 433 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 TMEM8AQ9HCN3 771 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 NDRG4Q9ULP0 352 aaKnown RBP5.8□□□□□ -1.48
LIMA1-205ENST00000550592 MRPS17Q9Y2R5 130 aaKnown RBP5.8□□□□□ -1.48
LIMA1-205ENST00000550592 MORC2Q9Y6X9 1032 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-205ENST00000550592 GLI2P10070 1586 aa5.8□□□□□ -1.48
LIMA1-205ENST00000550592 PPRC1Q5VV67 1664 aaKnown RBP5.79□□□□□ -1.48
LIMA1-205ENST00000550592 ADCY10Q96PN6 1610 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 A0A0B4J269 797 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 TMEM200CA6NKL6 621 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 NPC1O15118 1278 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 NDUFA10O95299 355 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 NR4A1P22736 598 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 GRK6P43250 576 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 TUBB3Q13509 450 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 E2F2Q14209 437 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 SPARCL1Q14515 664 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 MAPKAPK3Q16644 382 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 GEN1Q17RS7 908 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 TMEM95Q3KNT9 176 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 PREPLQ4J6C6 727 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-205ENST00000550592 FBLN7Q53RD9 439 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 RBM20Q5T481 1227 aaKnown RBP5.79□□□□□ -1.48
LIMA1-205ENST00000550592 ARL6IP4Q66PJ3 421 aaKnown RBP5.79□□□□□ -1.48
LIMA1-205ENST00000550592 CRTC1Q6UUV9 634 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 USP49Q70CQ1 688 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 KRTAP19-1Q8IUB9 90 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 COLGALT2Q8IYK4 626 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 SPATA5Q8NB90 893 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 RNF31Q96EP0 1072 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 MYEOVQ96EZ4 313 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 ADAM2Q99965 735 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 AMBRA1Q9C0C7 1298 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.79□□□□□ -1.48
LIMA1-205ENST00000550592 UNKLQ9H9P5 680 aaKnown RBP5.79□□□□□ -1.48
LIMA1-205ENST00000550592 ZBTB26Q9HCK0 441 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 OBP2BQ9NPH6 170 aa5.79□□□□□ -1.48
LIMA1-205ENST00000550592 PLB1Q6P1J6 1458 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 LGALS16A8MUM7 142 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 PIAS2O75928 621 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CDKL5O76039 1030 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 PEX11BO96011 259 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CSF1RP07333 972 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 EGR1P18146 543 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 DDX6P26196 483 aaKnown RBP eCLIP5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CD6P30203 668 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 MAGEA10P43363 369 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CTSWP56202 376 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 RAPGEF1Q13905 1077 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 PTK2BQ14289 1009 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CDSNQ15517 529 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 PTCHD3Q3KNS1 767 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 USP39Q53GS9 565 aaKnown RBP5.78□□□□□ -1.48
LIMA1-205ENST00000550592 ARHGAP40Q5TG30 622 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 VPS53Q5VIR6 699 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 ICE2Q659A1 982 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CACNA2D3Q8IZS8 1091 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 ZNF276Q8N554 614 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 CPEB3Q8NE35 698 aaKnown RBP5.78□□□□□ -1.48
LIMA1-205ENST00000550592 MYRIPQ8NFW9 859 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 TMEM125Q96AQ2 219 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 FAM227BQ96M60 508 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 RMDN3Q96TC7 470 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 KRTAP3-1Q9BYR8 98 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 INTS13Q9NVM9 706 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 IGSF9Q9P2J2 1179 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 ZMYND8Q9ULU4 1186 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-205ENST00000550592 SSX2IPQ9Y2D8 614 aa5.78□□□□□ -1.48
LIMA1-205ENST00000550592 FOXD2O60548 495 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-205ENST00000550592 TLR5O60602 858 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 RASAL1O95294 804 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 LAG3P18627 525 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 ATICP31939 592 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 SERPINF1P36955 418 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 PRKAG1P54619 331 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 FOXO1Q12778 655 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 KCNAB1Q14722 419 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 SLC5A9Q2M3M2 681 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.77□□□□□ -1.49
LIMA1-205ENST00000550592 MANEALQ5VSG8 457 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 CACHD1Q5VU97 1274 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 RAP1GAP2Q684P5 730 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 RGS7BPQ6MZT1 257 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-205ENST00000550592 MRNIPQ6NTE8 343 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 MZT2AQ6P582 158 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 CCDC28AQ8IWP9 274 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 PALM2Q8IXS6 379 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 SLC15A3Q8IY34 581 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 SPARTQ8N0X7 666 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 MYCT1Q8N699 235 aa5.77□□□□□ -1.49
LIMA1-205ENST00000550592 SLC25A43Q8WUT9 341 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-205ENST00000550592 CCT6BQ92526 530 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms