RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ARSAP15289 507 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 CXCL12P48061 93 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 CACNA2D1P54289 1103 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 IFRD2Q12894 506 aaPredicted RBP17.4■□□□□ 0.38
VPS29-207ENST00000549970 KCNB1Q14721 858 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 MTF1Q14872 753 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 DGKKQ5KSL6 1271 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 MAMSTRQ6ZN01 415 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 SPEM1Q8N4L4 309 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 SUMF1Q8NBK3 374 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 TMEM174Q8WUU8 243 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 CEP295NLQ96MC4 621 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 FAM126AQ9BYI3 521 aaPredicted RBP17.4■□□□□ 0.38
VPS29-207ENST00000549970 ELOVL4Q9GZR5 314 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 OTOGLQ3ZCN5 2332 aa17.39■□□□□ 0.38
VPS29-207ENST00000549970 LILRB5O75023 590 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 TDGF1P13385 188 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 HDCP19113 662 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 NR2F2P24468 414 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 USP4Q13107 963 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 CCINQ13939 588 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 ZNF77Q15935 545 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 ZACNQ401N2 412 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 DCLK2Q8N568 766 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 RUBCNQ92622 972 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 C8orf48Q96LL4 319 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 B3GNT5Q9BYG0 378 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 SDCBP2Q9H190 292 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 TMEM30AQ9NV96 361 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 DUS2Q9NX74 493 aaKnown RBP17.39■□□□□ 0.37
VPS29-207ENST00000549970 EHD2Q9NZN4 543 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 TRPM5Q9NZQ8 1165 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 GCNT4Q9P109 453 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 TRAF3IP3Q9Y228 551 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 GPR179Q6PRD1 2367 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 DCHS1Q96JQ0 3298 aa17.39■□□□□ 0.37
VPS29-207ENST00000549970 ABL1P00519 1130 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 IFNAR2P48551 515 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 NRLP54845 237 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 NOP14P78316 857 aaKnown RBP17.38■□□□□ 0.37
VPS29-207ENST00000549970 PDGFRLQ15198 375 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 SV2AQ7L0J3 742 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 KIAA2013Q8IYS2 634 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 TMC2Q8TDI7 906 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 SH3RF2Q8TEC5 729 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 OSCP1Q8WVF1 389 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 CHFRQ96EP1 664 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 MED10Q9BTT4 135 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 TTLL2Q9BWV7 592 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS29-207ENST00000549970 SMG5Q9UPR3 1016 aaKnown RBP17.38■□□□□ 0.37
VPS29-207ENST00000549970 WNT6Q9Y6F9 365 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 DMXL1Q9Y485 3027 aa17.38■□□□□ 0.37
VPS29-207ENST00000549970 HELZP42694 1942 aaKnown RBP17.37■□□□□ 0.37
VPS29-207ENST00000549970 P4HA1P13674 534 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 PIK3CAP42336 1068 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 PDE6CP51160 858 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 VAMP7P51809 220 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 GRSF1Q12849 480 aaKnown RBP eCLIP17.37■□□□□ 0.37
VPS29-207ENST00000549970 TAF10Q12962 218 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 BECN1Q14457 450 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 SGSM1Q2NKQ1 1148 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 TMEM196Q5HYL7 178 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 C1orf220Q5T0J3 134 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 SPOPLQ6IQ16 392 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 FAM35AQ86V20 835 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 GUF1Q8N442 669 aaKnown RBP17.37■□□□□ 0.37
VPS29-207ENST00000549970 CPA6Q8N4T0 437 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 TNIP3Q96KP6 325 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 EPC1Q9H2F5 836 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 C2orf42Q9NWW7 574 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 NCDNQ9UBB6 729 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 ARHGAP26Q9UNA1 814 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 SPTBN4Q9H254 2564 aa17.37■□□□□ 0.37
VPS29-207ENST00000549970 ATG2BQ96BY7 2078 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 ZNF292O60281 2723 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 ZNF840PA6NDX5 716 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 IKBKBO14920 756 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 AKAP3O75969 853 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 HLA-DRAP01903 254 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 TRIM49P0CI25 452 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 TRIM49CP0CI26 452 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 AMPD2Q01433 879 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 DMWDQ09019 674 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 ORC1Q13415 861 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 FSTL4Q6MZW2 842 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 ACOT1Q86TX2 421 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 SMYD4Q8IYR2 804 aaPredicted RBP17.36■□□□□ 0.37
VPS29-207ENST00000549970 NUP93Q8N1F7 819 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 SYNPOQ8N3V7 929 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 CCDC34Q96HJ3 373 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 SLITRK1Q96PX8 696 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 KCNK16Q96T55 309 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 MMRN2Q9H8L6 949 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 ECT2Q9H8V3 914 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 HMGXB4Q9UGU5 601 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 ATP8B3O60423 1300 aa17.36■□□□□ 0.37
VPS29-207ENST00000549970 CHURC1-FNTBB4DL54 471 aa17.35■□□□□ 0.37
VPS29-207ENST00000549970 TRDMT1O14717 391 aaKnown RBP17.35■□□□□ 0.37
VPS29-207ENST00000549970 MAPK13O15264 365 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms