RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 NOVA1P51513 510 aaKnown RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 VAMP7P51809 220 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 KRT83P78385 493 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 CCZ1BP86790 482 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 CCZ1P86791 482 aaPredicted RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 CREMQ03060 361 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 POU5F1BQ06416 359 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 RING1Q06587 406 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 NCBP1Q09161 790 aaKnown RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 ZNF252P-AS1Q0IIN9 211 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 BFSP1Q12934 665 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 SURF1Q15526 300 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 MAPK6Q16659 721 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 PABPC1LQ4VXU2 614 aaKnown RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 FUT10Q6P4F1 479 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 ZPBP2Q6X784 338 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 KSR1Q8IVT5 923 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 COLGALT2Q8IYK4 626 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 CCDC170Q8IYT3 715 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 HASPINQ8TF76 798 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 HDAC7Q8WUI4 952 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 TMEM143Q96AN5 459 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 GAD1Q99259 594 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 NELL2Q99435 816 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 TRAIPQ9BWF2 469 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 LSM14BQ9BX40 385 aaKnown RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 MRPL4Q9BYD3 311 aaKnown RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 DEF6Q9H4E7 631 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 PLCB1Q9NQ66 1216 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 XPNPEP1Q9NQW7 623 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 ABHD10Q9NUJ1 306 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 AGPAT5Q9NUQ2 364 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 SPTLC3Q9NUV7 552 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 HCFC1R1Q9NWW0 138 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 HSPBP1Q9NZL4 362 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 CEP72Q9P209 647 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 ARHGAP28Q9P2N2 729 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 KANSL3Q9P2N6 904 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 SUCLA2Q9P2R7 463 aaPredicted RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 FBXW11Q9UKB1 542 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 PYCARDQ9ULZ3 195 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 MYO6Q9UM54 1294 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 MRPS23Q9Y3D9 190 aaKnown RBP7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 FREM2Q5SZK8 3169 aa7.61□□□□□ -1.19
DEPDC4-208ENST00000549341 WDR81Q562E7 1941 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 ZMYM2Q9UBW7 1377 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 TTC26A0AVF1 554 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 ARL5CA6NH57 179 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 EXTL3O43909 919 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 FOXD2O60548 495 aaPredicted RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 ZNF623O75123 536 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 PIGRP01833 764 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 ITGA4P13612 1032 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 CEBPBP17676 345 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 GLRA2P23416 452 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 CXCL12P48061 93 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 AP3M2P53677 418 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 CDK17Q00537 523 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 MYL7Q01449 175 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 KCNA1Q09470 495 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 SPA17Q15506 151 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 KYAT1Q16773 422 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 USP41Q3LFD5 358 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 RTP2Q5QGT7 225 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 STPG1Q5TH74 334 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 TCEAL6Q6IPX3 200 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 KIAA1211LQ6NV74 962 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 ZNF410Q86VK4 478 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 VPS36Q86VN1 386 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 CEP57Q86XR8 500 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 RNF168Q8IYW5 571 aaPredicted RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 GPD1LQ8N335 351 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 PRPF31Q8WWY3 499 aaKnown RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 SYN2Q92777 582 aaPredicted RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 TCEAL3Q969E4 200 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 MCRS1Q96EZ8 462 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 SPAG5Q96R06 1193 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 FNBP1Q96RU3 617 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 GPR62Q9BZJ7 368 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 PLA2G2FQ9BZM2 168 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 INO80BQ9C086 356 aaPredicted RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 ARRDC1-AS1Q9H2J1 176 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 BRD9Q9H8M2 597 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 LMAN1LQ9HAT1 526 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 FAM207AQ9NSI2 230 aaPredicted RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 RBM12Q9NTZ6 932 aaKnown RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 PRMT7Q9NVM4 692 aaPredicted RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 CACNG4Q9UBN1 327 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 SIK3Q9Y2K2 1263 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 HES2Q9Y543 173 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 BZW2Q9Y6E2 419 aaKnown RBP7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 PIAS3Q9Y6X2 628 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 C2orf16Q68DN1 1984 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 IGSF10Q6WRI0 2623 aa7.6□□□□□ -1.19
DEPDC4-208ENST00000549341 LAMA5O15230 3695 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 ARID2Q68CP9 1835 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 FANCMQ8IYD8 2048 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 F5P12259 2224 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 SF3B1O75533 1304 aaKnown RBP eCLIP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms