RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 KCNA4P22459 653 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 KLRC2P26717 231 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 CDH6P55285 790 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 PWP2Q15269 919 aaKnown RBP11.64□□□□□ -0.55
CUX1-212ENST00000547394 CNGA2Q16280 664 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 PTGISQ16647 500 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 QPCTQ16769 361 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 PPP6R3Q5H9R7 873 aaPredicted RBP11.64□□□□□ -0.55
CUX1-212ENST00000547394 ANKRD22Q5VYY1 191 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 C9orf57Q5W0N0 161 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 CYP4X1Q8N118 509 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 FAM71DQ8N9W8 422 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 AP5M1Q9H0R1 490 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 SAYSD1Q9NPB0 183 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 TMPRSS4Q9NRS4 437 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 TMEM51Q9NW97 253 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 SLC12A6Q9UHW9 1150 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 STRIP2Q9ULQ0 834 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 GABRQQ9UN88 632 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 TCRBV7S3A2A0A539 114 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 KDELR1P24390 212 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 MAN1A1P33908 653 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 FKBP1BP68106 108 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 UNC45BQ8IWX7 931 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 RBM15Q96T37 977 aaKnown RBP eCLIP11.64□□□□□ -0.551e-11■■■■□ 20.4
CUX1-212ENST00000547394 WHRNQ9P202 907 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 MRPL42Q9Y6G3 142 aaKnown RBP11.64□□□□□ -0.55
CUX1-212ENST00000547394 RRN3P2A6NIE6 340 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 I3L4J1 428 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 CHN1P15882 459 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 ITIH2P19823 946 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 ATICP31939 592 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 AUHQ13825 339 aaKnown RBP11.63□□□□□ -0.55
CUX1-212ENST00000547394 UBXN11Q5T124 520 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 FAXCQ5TGI0 409 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 SAPCD2Q86UD0 394 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 CCDC13Q8IYE1 715 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 IPO4Q8TEX9 1081 aaKnown RBP11.63□□□□□ -0.55
CUX1-212ENST00000547394 GRK7Q8WTQ7 553 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 TRAIPQ9BWF2 469 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 IPPQ9Y573 584 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 HEY1Q9Y5J3 304 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 PAPSS1O43252 624 aaPredicted RBP11.63□□□□□ -0.55
CUX1-212ENST00000547394 RNF8O76064 485 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 NUDT17P0C025 328 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 TKTP29401 623 aaKnown RBP11.63□□□□□ -0.55
CUX1-212ENST00000547394 CETN2P41208 172 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 IFNL1Q8IU54 200 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 C10orf67Q8IYJ2 551 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 ANKRD42Q8N9B4 389 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 SLC2A14Q8TDB8 520 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 PAAF1Q9BRP4 392 aa11.63□□□□□ -0.55
CUX1-212ENST00000547394 RRP15Q9Y3B9 282 aaKnown RBP11.63□□□□□ -0.55
CUX1-212ENST00000547394 C17orf102A2RUQ5 167 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 MBLAC1A4D2B0 266 aaPredicted RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 TRUB2O95900 331 aaKnown RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 HMGCRP04035 888 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 VCPP55072 806 aaKnown RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 PITX1P78337 314 aaPredicted RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 INCA1Q0VD86 236 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 SLMAPQ14BN4 828 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 DCAF4L1Q3SXM0 396 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 CCDC14Q49A88 953 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 LCLAT1Q6UWP7 414 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 C17orf99Q6UX52 265 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 CYP4V2Q6ZWL3 525 aaPredicted RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 TAX1BP1Q86VP1 789 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 ALLCQ8N6M5 410 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 CCDC89Q8N998 374 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 SMG8Q8ND04 991 aaKnown RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 BEST2Q8NFU1 509 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 HASPINQ8TF76 798 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 KBTBD7Q8WVZ9 684 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 MAIP1Q8WWC4 291 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 SLCO2A1Q92959 643 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 MCRS1Q96EZ8 462 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 CCT8L2Q96SF2 557 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 CYP3A43Q9HB55 503 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 SMIM35A0A1B0GVV1 85 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 BEST1O76090 585 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 GPD1P21695 349 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 PURAQ00577 322 aaKnown RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 OASLQ15646 514 aaKnown RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 ZBTB6Q15916 424 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 FBXO47Q5MNV8 452 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 HOOK3Q86VS8 718 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 NLRP14Q86W24 1093 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 FAM228AQ86W67 206 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 FAM172AQ8WUF8 416 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 TLCD1Q96CP7 247 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 ABT1Q9ULW3 272 aaKnown RBP11.62□□□□□ -0.55
CUX1-212ENST00000547394 MFHAS1Q9Y4C4 1052 aa11.62□□□□□ -0.55
CUX1-212ENST00000547394 C2CD4BA6NLJ0 364 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 KPNA7A9QM74 516 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 POC1B-GALNT4F8VUJ3 575 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 TTC4O95801 387 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 IVLP07476 585 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 GNL1P36915 607 aaPredicted RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 MLH1P40692 756 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ADAM17P78536 824 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms