RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 KCNB1Q14721 858 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 EMC10Q5UCC4 262 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 LYSMD4Q5XG99 296 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 PDCL2Q8N4E4 241 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 KCTD17Q8N5Z5 321 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 MYCT1Q8N699 235 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 TXNDC5Q8NBS9 432 aaKnown RBP13.69□□□□□ -0.22
SCAF11-208ENST00000546534 WHAMMQ8TF30 809 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 SPACA7Q96KW9 195 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 PKMYT1Q99640 499 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 ACBD6Q9BR61 282 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 GTPBP2Q9BX10 602 aaKnown RBP13.69□□□□□ -0.22
SCAF11-208ENST00000546534 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.69□□□□□ -0.22
SCAF11-208ENST00000546534 PILRBQ9UKJ0 227 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 GTF3C4Q9UKN8 822 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 SLC6A14Q9UN76 642 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 L1RE1Q9UN81 338 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 ARHGAP26Q9UNA1 814 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 GPSM3Q9Y4H4 160 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 CYP17A1P05093 508 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 SCP2P22307 547 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 ACAT1P24752 427 aaKnown RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 SLC6A11P48066 632 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 MAP7D1Q3KQU3 841 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 TMEM119Q4V9L6 283 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 INTS6LQ5JSJ4 861 aaKnown RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 SPDYCQ5MJ68 293 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 PEAR1Q5VY43 1037 aaPredicted RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 ADALQ6DHV7 355 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 RAB44Q7Z6P3 723 aaPredicted RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 GPBP1Q86WP2 473 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 SCN4BQ8IWT1 228 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 HDDC3Q8N4P3 179 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 FSIP1Q8NA03 581 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 HMGB4Q8WW32 186 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 CDK5RAP3Q96JB5 506 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 LLPHQ9BRT6 129 aaKnown RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 POLMQ9NP87 494 aaPredicted RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 ZDHHC4Q9NPG8 344 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 DDX43Q9NXZ2 648 aaKnown RBP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 BCCIPQ9P287 314 aaKnown RBP eCLIP13.68□□□□□ -0.22
SCAF11-208ENST00000546534 MYH11P35749 1972 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 DMXL2Q8TDJ6 3036 aa13.68□□□□□ -0.22
SCAF11-208ENST00000546534 PTPRDP23468 1912 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 MYMKA6NI61 221 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 LEFTY2O00292 366 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 TRAK2O60296 914 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 FAM13AO94988 1023 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 CD59P13987 128 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 HOXD12P35452 270 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 DPP6P42658 865 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 KIR2DL1P43626 348 aaPredicted RBP13.67□□□□□ -0.22
SCAF11-208ENST00000546534 ZNF131P52739 623 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 GTF2BQ00403 316 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 GFPT1Q06210 699 aaPredicted RBP13.67□□□□□ -0.22
SCAF11-208ENST00000546534 SCAPQ12770 1279 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 DHX8Q14562 1220 aaKnown RBP13.67□□□□□ -0.22
SCAF11-208ENST00000546534 DUOXA1Q1HG43 343 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 LMBRD2Q68DH5 695 aaPredicted RBP13.67□□□□□ -0.22
SCAF11-208ENST00000546534 CRELD2Q6UXH1 353 aaPredicted RBP13.67□□□□□ -0.22
SCAF11-208ENST00000546534 PDZD3Q86UT5 571 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 ADGRG2Q8IZP9 1017 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 FAM184AQ8NB25 1140 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 OR2I1PQ8NGU4 316 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 ZNF560Q96MR9 790 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 FIZ1Q96SL8 496 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 IKZF4Q9H2S9 585 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 PARVGQ9HBI0 331 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 AGO2Q9UKV8 859 aaKnown RBP13.67□□□□□ -0.22
SCAF11-208ENST00000546534 LIMCH1Q9UPQ0 1083 aa13.67□□□□□ -0.22
SCAF11-208ENST00000546534 TCRBV21S2A2A0A5A6 115 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 HCRTO43612 131 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 OPHN1O60890 802 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 HUS1O60921 280 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 ADAM23O75077 832 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 KAT7O95251 611 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 SERPINF2P08697 491 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 POLR2BP30876 1174 aaKnown RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 PNPLA4P41247 253 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 HMGN5P82970 282 aaKnown RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 ATP2C1P98194 919 aaPredicted RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 BYSLQ13895 437 aaKnown RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 DHCR24Q15392 516 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 ZNF423Q2M1K9 1284 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 COL28A1Q2UY09 1125 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 CFAP221Q4G0U5 840 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 HSF5Q4G112 596 aaPredicted RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 EOGTQ5NDL2 527 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 SCARA3Q6AZY7 606 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 FILIP1Q7Z7B0 1213 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 OSTM1Q86WC4 334 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 SPATA2LQ8IUW3 424 aaPredicted RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 PGBD3Q8N328 593 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 DEFB119Q8N690 84 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 ZNF454Q8N9F8 522 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 CEP76Q8TAP6 659 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 SPATA18Q8TC71 538 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 PNKPQ96T60 521 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 CAPN10Q9HC96 672 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms