RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 CCDC92Q53HC0 331 aaPredicted RBP8.96□□□□□ -0.97
CLIP1-218ENST00000545889 FAM171A1Q5VUB5 890 aa8.96□□□□□ -0.97
CLIP1-218ENST00000545889 NIPA1Q7RTP0 329 aa8.96□□□□□ -0.97
CLIP1-218ENST00000545889 TNS4Q8IZW8 715 aa8.96□□□□□ -0.97
CLIP1-218ENST00000545889 BPIFA3Q9BQP9 254 aa8.96□□□□□ -0.97
CLIP1-218ENST00000545889 VPS11Q9H270 941 aa8.96□□□□□ -0.97
CLIP1-218ENST00000545889 MAN1C1Q9NR34 630 aa8.96□□□□□ -0.97
CLIP1-218ENST00000545889 PAIP2BQ9ULR5 123 aaKnown RBP8.96□□□□□ -0.97
CLIP1-218ENST00000545889 IGLV3-22A0A075B6J6 115 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 ARHGAP10A1A4S6 786 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 PPP1R37O75864 691 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 KRT38O76015 456 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 BMP6P22004 513 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 NPTX2P47972 431 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 IL9RQ01113 521 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 GRIK3Q13003 919 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CAPRIN1Q14444 709 aaKnown RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 MFSD10Q14728 455 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 MTFR1Q15390 333 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 RBM43Q6ZSC3 357 aaKnown RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 RRM2BQ7LG56 351 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 SLC26A7Q8TE54 656 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 RAPGEF5Q92565 580 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 PPWD1Q96BP3 646 aaKnown RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 PBKQ96KB5 322 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 MAGEB10Q96LZ2 347 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 AGAP3Q96P47 875 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CGRRF1Q99675 332 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 SPATA16Q9BXB7 569 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 UBXN6Q9BZV1 441 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 EPN3Q9H201 632 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 DNAJC17Q9NVM6 304 aaKnown RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 DBR1Q9UK59 544 aaKnown RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 DSEQ9UL01 958 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 ATP8A1Q9Y2Q0 1164 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 SRCAPQ6ZRS2 3230 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 ZNF831Q5JPB2 1677 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CASTOR2A6NHX0 329 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CYB561D2O14569 222 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 NDUFS3O75489 264 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 FTLP02792 175 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 WEE2P0C1S8 567 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 NOVP48745 357 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CASP4P49662 377 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 PSEN2P49810 448 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 TAP1Q03518 808 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 EFHC1Q5JVL4 640 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 LDLRAD1Q5T700 205 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 RNF135Q8IUD6 432 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CD302Q8IX05 232 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 CCNYL1Q8N7R7 359 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 KLHL29Q96CT2 875 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 SEMA6BQ9H3T3 888 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 EVA1BQ9NVM1 165 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 VAV3Q9UKW4 847 aa8.96□□□□□ -0.98
CLIP1-218ENST00000545889 COL11A2P13942 1736 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-218ENST00000545889 A0A087WZ62 844 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 F5H5T6 163 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 OGTO15294 1046 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 GRAP2O75791 330 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ITGB3P05106 788 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 CXCR5P32302 372 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 GJA5P36382 358 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 MAP3K10Q02779 954 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 DYNC1I2Q13409 638 aaKnown RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 GRIK4Q16099 956 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ZC3H18Q86VM9 953 aaKnown RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ZNF564Q8TBZ8 553 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ZNF558Q96NG5 402 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 HSD17B14Q9BPX1 270 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 FDXACB1Q9BRP7 624 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 VIPAS39Q9H9C1 493 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 PARVAQ9NVD7 372 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 C6orf203Q9P0P8 240 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ZFATQ9P243 1243 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 TBK1Q9UHD2 729 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 NCKAP1Q9Y2A7 1128 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 SPATA31C2B4DYI2 1134 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 H0Y3Z8 333 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 RCN2Q14257 317 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 AMHR2Q16671 573 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 RABGAP1LQ5R372 815 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 NFRKBQ6P4R8 1299 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 PHACTR4Q8IZ21 702 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 XPO6Q96QU8 1125 aaKnown RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 CBWD1Q9BRT8 395 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 NHEJ1Q9H9Q4 299 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 OLFML3Q9NRN5 406 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 MROH7Q68CQ1 1323 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 IQANK1A0A1B0GTG1 560 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 SLC15A5A6NIM6 579 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 RASGRF2O14827 1237 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 RTN3O95197 1032 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 ETFBP38117 255 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 CASP5P51878 434 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 SLC12A3P55017 1021 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 KIF19Q2TAC6 998 aa8.95□□□□□ -0.98
CLIP1-218ENST00000545889 PTRHD1Q6GMV3 140 aaKnown RBP8.95□□□□□ -0.98
CLIP1-218ENST00000545889 SAPCD2Q86UD0 394 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms