RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 FBXO40Q9UH90 709 aa14.36□□□□□ -0.11
VPS33A-208ENST00000543633 XPO7Q9UIA9 1087 aaKnown RBP14.36□□□□□ -0.11
VPS33A-208ENST00000543633 IKBKGQ9Y6K9 419 aa14.36□□□□□ -0.11
VPS33A-208ENST00000543633 MCF2LO15068 1137 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 GYG2O15488 501 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 ENTPD5O75356 428 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 LRCH4O75427 683 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 BANF1O75531 89 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 DLDP09622 509 aaKnown RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 STIP1P31948 543 aaKnown RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 SSTR3P32745 418 aaPredicted RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 CCNHP51946 323 aaPredicted RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 EFNA5P52803 228 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 GDF10P55107 478 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 ZNF200P98182 395 aaPredicted RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 PTK7Q13308 1070 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 CCDC6Q16204 474 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 ZBTB41Q5SVQ8 909 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 SH2D5Q6ZV89 423 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 WDTC1Q8N5D0 677 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 RAB3IL1Q8TBN0 382 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 SLC7A3Q8WY07 619 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 FAM136AQ96C01 138 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 FAM167BQ9BTA0 163 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 VCXQ9H320 206 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 SPATS2LQ9NUQ6 558 aaKnown RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 SLC17A7Q9P2U7 560 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 STX18Q9P2W9 335 aaKnown RBP14.35□□□□□ -0.11
VPS33A-208ENST00000543633 ZNF212Q9UDV6 495 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 ZNF180Q9UJW8 692 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 LCTP09848 1927 aa14.35□□□□□ -0.11
VPS33A-208ENST00000543633 GOLGA8SH3BPF8 625 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 GOLGA8MH3BSY2 632 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 CHADO15335 359 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 AHCYL1O43865 530 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 FAM189A1O60320 539 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 FESP07332 822 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 INHBAP08476 426 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 GSTA2P09210 222 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 SKIP12755 728 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ATP4AP20648 1035 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ICAM3P32942 547 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 RAP1GDS1P52306 607 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 TBCCQ15814 346 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 NBPF20Q3BBV1 942 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 BBS9Q3SYG4 887 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 TRIM68Q6AZZ1 485 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 CMASQ8NFW8 434 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-208ENST00000543633 MCUR1Q96AQ8 359 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 C7orf26Q96N11 449 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 KCNK13Q9HB14 408 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ZNF302Q9NR11 478 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 NMRK1Q9NWW6 199 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 KCNK4Q9NYG8 393 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 DCTN4Q9UJW0 460 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 A0A0G2JND7 137 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 F8W8V4 182 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ADCY3O60266 1144 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 MAGEC1O60732 1142 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 SKAP2O75563 359 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-208ENST00000543633 RARBP10826 455 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 KRT3P12035 628 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ZNF280AP59817 542 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-208ENST00000543633 EIF3EP60228 445 aaKnown RBP14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ZBTB16Q05516 673 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 SLC34A1Q06495 639 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 TNFAIP1Q13829 316 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 KCNJ11Q14654 390 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 DBN1Q16643 649 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 TMEM143Q96AN5 459 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 ATG4CQ96DT6 458 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 MRRFQ96E11 262 aaKnown RBP14.34□□□□□ -0.11
VPS33A-208ENST00000543633 SYT17Q9BSW7 474 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 RSAD1Q9HA92 442 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 SLC24A3Q9HC58 644 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.34□□□□□ -0.11
VPS33A-208ENST00000543633 TEX264Q9Y6I9 313 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 NUMBLQ9Y6R0 609 aa14.34□□□□□ -0.11
VPS33A-208ENST00000543633 IGKV6D-21A0A0A0MT36 114 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 TOM1L1O75674 476 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 PSMG1O95456 288 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 ESRRAP11474 423 aaPredicted RBP14.33□□□□□ -0.12
VPS33A-208ENST00000543633 RPS12P25398 132 aaKnown RBP14.33□□□□□ -0.12
VPS33A-208ENST00000543633 SERPINB3P29508 390 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 CCNFP41002 786 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 GAD2Q05329 585 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 DPYSL3Q14195 570 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 NOMO1Q15155 1222 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 RCN1Q15293 331 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 DUOXA2Q1HG44 320 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 PTPN20Q4JDL3 420 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 KHDC1Q4VXA5 237 aaKnown RBP14.33□□□□□ -0.12
VPS33A-208ENST00000543633 TTC39BQ5VTQ0 682 aaPredicted RBP14.33□□□□□ -0.12
VPS33A-208ENST00000543633 RFWD3Q6PCD5 774 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 VPS52Q8N1B4 723 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 PPFIBP2Q8ND30 876 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 ZNF483Q8TF39 744 aaPredicted RBP14.33□□□□□ -0.12
VPS33A-208ENST00000543633 PTPRN2Q92932 1015 aa14.33□□□□□ -0.12
VPS33A-208ENST00000543633 ACSF2Q96CM8 615 aaPredicted RBP14.33□□□□□ -0.12
VPS33A-208ENST00000543633 OXNAD1Q96HP4 312 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms