RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 ALDH1A2O94788 518 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 PDCP20941 246 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 BDNFP23560 247 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 STAT6P42226 847 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 PPP3CCP48454 512 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 CASP5P51878 434 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 PSMC1P62191 440 aaKnown RBP16.49■□□□□ 0.23
RTN3-211ENST00000542238 CYP27A1Q02318 531 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 DUOXA2Q1HG44 320 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 SCARA3Q6AZY7 606 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 ANO7Q6IWH7 933 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 DENND5BQ6ZUT9 1274 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 STXBP4Q6ZWJ1 553 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 CYP2U1Q7Z449 544 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 TTC30AQ86WT1 665 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 MYLPFQ96A32 169 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 FAM84AQ96KN4 292 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 CNOT6LQ96LI5 555 aaKnown RBP16.49■□□□□ 0.23
RTN3-211ENST00000542238 TMEM9BQ9NQ34 198 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 PANK4Q9NVE7 773 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 FBXO2Q9UK22 296 aaPredicted RBP16.49■□□□□ 0.23
RTN3-211ENST00000542238 MMP17Q9ULZ9 603 aa16.49■□□□□ 0.23
RTN3-211ENST00000542238 LNP1A1A4G5 178 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 ZNF233A6NK53 670 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 K7EQS6 105 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 SLC9A3R1O14745 358 aaPredicted RBP16.48■□□□□ 0.23
RTN3-211ENST00000542238 TRIM66O15016 1216 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 PRPF6O94906 941 aaKnown RBP16.48■□□□□ 0.23
RTN3-211ENST00000542238 PDGFRBP09619 1106 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 LMO2P25791 158 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 OPRD1P41143 372 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 MRPS21P82921 87 aaKnown RBP16.48■□□□□ 0.23
RTN3-211ENST00000542238 LMBRD2Q68DH5 695 aaPredicted RBP16.48■□□□□ 0.23
RTN3-211ENST00000542238 RASSF3Q86WH2 238 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 CCDC33Q8N5R6 958 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 KIAA1958Q8N8K9 716 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 KBTBD7Q8WVZ9 684 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 CLIC6Q96NY7 704 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 MMS19Q96T76 1030 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 CRTAC1Q9NQ79 661 aa16.48■□□□□ 0.23
RTN3-211ENST00000542238 FRMD3A2A2Y4 597 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 ABL1P00519 1130 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 PROS1P07225 676 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 WARSP23381 471 aaKnown RBP16.47■□□□□ 0.23
RTN3-211ENST00000542238 DHPSP49366 369 aaPredicted RBP16.47■□□□□ 0.23
RTN3-211ENST00000542238 ZNF252P-AS1Q0IIN9 211 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 CRY1Q16526 586 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 LIMS2Q7Z4I7 341 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 FILIP1Q7Z7B0 1213 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 CCDC65Q8IXS2 484 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 OR5B17Q8NGF7 314 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 MYCBPAPQ8TBZ2 947 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 PANK2Q9BZ23 570 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 SNX25Q9H3E2 840 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 MYOFQ9NZM1 2061 aa16.47■□□□□ 0.23
RTN3-211ENST00000542238 CFAP47Q6ZTR5 3102 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 ZNF840PA6NDX5 716 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 MAP3K13O43283 966 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 CYP17A1P05093 508 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 GNL1P36915 607 aaPredicted RBP16.46■□□□□ 0.23
RTN3-211ENST00000542238 USP46P62068 366 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 NOP14P78316 857 aaKnown RBP16.46■□□□□ 0.23
RTN3-211ENST00000542238 SLC7A9P82251 487 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 ZXDBP98169 803 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 CEBPZQ03701 1054 aaKnown RBP16.46■□□□□ 0.23
RTN3-211ENST00000542238 SH3PXD2AQ5TCZ1 1133 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 HS2ST1Q7LGA3 356 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 ADGRG2Q8IZP9 1017 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 MDGA1Q8NFP4 955 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 PCED1BQ96HM7 432 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 SPACA7Q96KW9 195 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 PNKPQ96T60 521 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 TTLL2Q9BWV7 592 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 FGFBP2Q9BYJ0 223 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 KIAA1586Q9HCI6 787 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 CIZ1Q9ULV3 898 aaPredicted RBP16.46■□□□□ 0.23
RTN3-211ENST00000542238 CPQQ9Y646 472 aa16.46■□□□□ 0.23
RTN3-211ENST00000542238 PTPRJQ12913 1337 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 FAM208BQ5VWN6 2430 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 F8VP50 259 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 GIPC1O14908 333 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 ADH1CP00326 375 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 APODP05090 189 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 CEACAM1P13688 526 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 CSRP1P21291 193 aaKnown RBP16.45■□□□□ 0.22
RTN3-211ENST00000542238 BCKDHBP21953 392 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 EIF2DP41214 584 aaKnown RBP16.45■□□□□ 0.22
RTN3-211ENST00000542238 FOXC1Q12948 553 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 DHCR24Q15392 516 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 HSF5Q4G112 596 aaPredicted RBP16.45■□□□□ 0.22
RTN3-211ENST00000542238 MDH1BQ5I0G3 518 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 TDRD10Q5VZ19 366 aaKnown RBP16.45■□□□□ 0.22
RTN3-211ENST00000542238 LPCAT2Q7L5N7 544 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 DDX42Q86XP3 938 aaKnown RBP eCLIP16.45■□□□□ 0.22
RTN3-211ENST00000542238 CBWD2Q8IUF1 395 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 WDR49Q8IV35 697 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 WHAMMQ8TF30 809 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 PIGKQ92643 395 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 C8orf48Q96LL4 319 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 SLITRK1Q96PX8 696 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms