RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 C2CD6Q53TS8 623 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 KIAA0319Q5VV43 1072 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 DENND1BQ6P3S1 775 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 DSTYKQ6XUX3 929 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 SPRED2Q7Z698 418 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 CPNE8Q86YQ8 564 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 TMEM86AQ8N2M4 240 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 FIBCD1Q8N539 461 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 WDTC1Q8N5D0 677 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 SPATA18Q8TC71 538 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 TMEM176AQ96HP8 235 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 KRT12Q99456 494 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 ZBED2Q9BTP6 218 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 TRIM7Q9C029 511 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 FAM53CQ9NYF3 392 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 LCMT1Q9UIC8 334 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.16□□□□□ -0.3
SMAD3-204ENST00000540846 SF3B1O75533 1304 aaKnown RBP eCLIP13.16□□□□□ -0.35e-6■■■■■ 142.6
SMAD3-204ENST00000540846 LINC01553A4QN01 128 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 MYO1FO00160 1098 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 O00370 1275 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 KRIT1O00522 736 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 TADA2AO75478 443 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 MYOGP15173 224 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 GSCP56915 257 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-204ENST00000540846 ZNF211Q13398 564 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-204ENST00000540846 MRPL58Q14197 206 aaKnown RBP13.15□□□□□ -0.3
SMAD3-204ENST00000540846 CCDC142Q17RM4 750 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 MAP9Q49MG5 647 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 TAS1R1Q7RTX1 841 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 UNC93AQ86WB7 457 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 PKMYT1Q99640 499 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 FUT8Q9BYC5 575 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 DPEP3Q9H4B8 488 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 KIAA1257Q9ULG3 409 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 STRIP2Q9ULQ0 834 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 PATJQ8NI35 1801 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 SYN3O14994 580 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 OAZ2O95190 189 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 TAP1Q03518 808 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 CNGA2Q16280 664 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 PPP2R5EQ16537 467 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 PTPN20Q4JDL3 420 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 RTP2Q5QGT7 225 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 PPP1R15BQ5SWA1 713 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 SEL1L2Q5TEA6 688 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 DNAJC24Q6P3W2 148 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 CCNI2Q6ZMN8 369 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-204ENST00000540846 PHLDB2Q86SQ0 1253 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 ERICH1Q86X53 443 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 CRYBG2Q8N1P7 616 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 C3orf20Q8ND61 904 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 FEZF2Q8TBJ5 459 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 B3GALT6Q96L58 329 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 LPIN3Q9BQK8 851 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 NT5C1AQ9BXI3 368 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 AP1M1Q9BXS5 423 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 SLITRK6Q9H5Y7 841 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 CHST7Q9NS84 486 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 SPG21Q9NZD8 308 aa13.15□□□□□ -0.3
SMAD3-204ENST00000540846 YBX2Q9Y2T7 364 aaKnown RBP13.15□□□□□ -0.3
SMAD3-204ENST00000540846 GOLGA6L10A0A0M3HER8 536 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 CARNS1A5YM72 827 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 MAP2K7O14733 419 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 RAD51CO43502 376 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 TRAPPC3O43617 180 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 TBC1D4O60343 1298 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 ATP2C2O75185 946 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 ZMYND10O75800 440 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 SASH3O75995 380 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 MICAL2O94851 1124 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 HEXIM1O94992 359 aaKnown RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 GNL1P36915 607 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 LHX1P48742 406 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 RWDD2BP57060 319 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 SLC7A5Q01650 507 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 ELAVL2Q12926 359 aaKnown RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 STILQ15468 1287 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 SGO2Q562F6 1265 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 FAM171A1Q5VUB5 890 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 ACOT1Q86TX2 421 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 KLHL7Q8IXQ5 586 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 OR6B3Q8NGW1 331 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 OR10T2Q8NGX3 314 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 AENQ8WTP8 325 aaKnown RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 CRTAC1Q9NQ79 661 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 GDF3Q9NR23 364 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 DDX43Q9NXZ2 648 aaKnown RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 OGFRQ9NZT2 677 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 IP6K2Q9UHH9 426 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 CYTH4Q9UIA0 394 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 DSEQ9UL01 958 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 PCDHA11Q9Y5I1 949 aa13.14□□□□□ -0.31
SMAD3-204ENST00000540846 COL4A4P53420 1690 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-204ENST00000540846 TMEM191CA6NGB0 347 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 A8MXQ7 604 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 BHMG1C9JSJ3 638 aaPredicted RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 C5orf67F2Z3F1 127 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 SART1O43290 800 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms