RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SQORQ9Y6N5 450 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 STON1Q9Y6Q2 735 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 LOC100506127A0A0U1RQW1 187 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 USP17L12C9JPN9 530 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 USP17L21D6R901 530 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 MEIS1O00470 390 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 DBTP11182 482 aaKnown RBP9.07□□□□□ -0.96
YBX3-208ENST00000540447 MAGEA10P43363 369 aaPredicted RBP9.07□□□□□ -0.96
YBX3-208ENST00000540447 ACTR2P61160 394 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 PRMT9Q6P2P2 845 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 BHLHE22Q8NFJ8 381 aaPredicted RBP9.07□□□□□ -0.96
YBX3-208ENST00000540447 ZNF75CPQ92670 426 aaPredicted RBP9.07□□□□□ -0.96
YBX3-208ENST00000540447 KRT35Q92764 455 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 TEKT3Q9BXF9 490 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 ALDH8A1Q9H2A2 487 aaPredicted RBP9.07□□□□□ -0.96
YBX3-208ENST00000540447 ABCG2Q9UNQ0 655 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 FNDC3AQ9Y2H6 1198 aaKnown RBP9.07□□□□□ -0.96
YBX3-208ENST00000540447 ZHX2Q9Y6X8 837 aa9.07□□□□□ -0.96
YBX3-208ENST00000540447 E2F8A0AVK6 867 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SYNDIG1LA6NDD5 238 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 RFX1P22670 979 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SFNP31947 248 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 C8orf59Q8N0T1 100 aaPredicted RBP9.06□□□□□ -0.96
YBX3-208ENST00000540447 PIK3C3Q8NEB9 887 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 PCSK1NQ9UHG2 260 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 NOS1P29475 1434 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 KIF28PB7ZC32 967 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 DDX3XO00571 662 aaKnown RBP eCLIP9.06□□□□□ -0.96
YBX3-208ENST00000540447 H2AFYO75367 372 aaKnown RBP9.06□□□□□ -0.96
YBX3-208ENST00000540447 KLK7P49862 253 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 KCNQ4P56696 695 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 POU5F1Q01860 360 aaKnown RBP9.06□□□□□ -0.96
YBX3-208ENST00000540447 TIMM50Q3ZCQ8 353 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 PAGE2BQ5JRK9 111 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 KIAA0408Q6ZU52 694 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 TPCN2Q8NHX9 752 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 CDRT15Q96T59 188 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 ASAP1Q9ULH1 1129 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SIK3Q9Y2K2 1263 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 M0QX08 132 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 MYO1DO94832 1006 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 ZSWIM2Q8NEG5 633 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 HSPBAP1Q96EW2 488 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 VMP1Q96GC9 406 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 FAXDC2Q96IV6 333 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 CLEC11AQ9Y240 323 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 DNM1LO00429 736 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 GLRA3O75311 464 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 TNFRSF8P28908 595 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 FLT3P36888 993 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SEPHS1P49903 392 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 BCAR1P56945 870 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 COASYQ13057 564 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 NME3Q13232 169 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 ZNF394Q53GI3 561 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SPDYCQ5MJ68 293 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 ELMOD2Q8IZ81 293 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 KIFC1Q9BW19 673 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 VAV3Q9UKW4 847 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 FRMPD2Q68DX3 1309 aaPredicted RBP9.06□□□□□ -0.96
YBX3-208ENST00000540447 STK36Q9NRP7 1315 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SAGE2PA6NJ88 616 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 ASLP04424 464 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 NPR3P17342 541 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 ITGALP20701 1170 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 HSF2Q03933 536 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 DPYDQ12882 1025 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 SEL1L3Q68CR1 1132 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 TTC7BQ86TV6 843 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 TMEM35BQ8NCS4 154 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 DMRTB1Q96MA1 342 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 AVENQ9NQS1 362 aaPredicted RBP9.06□□□□□ -0.96
YBX3-208ENST00000540447 SLC24A2Q9UI40 661 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 PCDHGB4Q9UN71 923 aa9.06□□□□□ -0.96
YBX3-208ENST00000540447 APOA4P06727 396 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 APRTP07741 180 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 COMTP21964 271 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 HK2P52789 917 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SESN2P58004 480 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 C2CD6Q53TS8 623 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 PYDC2Q56P42 97 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 PAGE2Q7Z2X7 111 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 CENPLQ8N0S6 344 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 VPS37AQ8NEZ2 397 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 KBTBD8Q8NFY9 601 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 PLBD2Q8NHP8 589 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 FAM118BQ9BPY3 351 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ZSCAN5AQ9BUG6 496 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 EHD1Q9H4M9 534 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SLC5A4Q9NY91 659 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 RAPGEFL1Q9UHV5 662 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SLC8A2Q9UPR5 921 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 THRAP3Q9Y2W1 955 aaKnown RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 F8W8V4 182 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 TMEM253P0C7T8 217 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ITIH1P19827 911 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SPRP35270 261 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 IL18R1Q13478 541 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 USP10Q14694 798 aaKnown RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 EPC2Q52LR7 807 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms