RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 PSMD2Q13200 908 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 ST3GAL2Q16842 350 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 TRAPPC11Q7Z392 1133 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 RASSF3Q86WH2 238 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 TTC16Q8NEE8 873 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 TSTD1Q8NFU3 115 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 USP33Q8TEY7 942 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 PCED1BQ96HM7 432 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 LSM14BQ9BX40 385 aaKnown RBP12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 TRIM9Q9C026 710 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 LINC00597Q9H2U6 94 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 KBTBD4Q9NVX7 518 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 ANGPTL2Q9UKU9 493 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 OBSL1O75147 1896 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 GREB1Q4ZG55 1949 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 BCLAF3A2AJT9 711 aaKnown RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 ZNF840PA6NDX5 716 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 LEFTY2O00292 366 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 SLC9A3R1O14745 358 aaPredicted RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 GNL1P36915 607 aaPredicted RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 OPRD1P41143 372 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 EIF2DP41214 584 aaKnown RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 USP46P62068 366 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 ZXDBP98169 803 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 AMPD3Q01432 767 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 E2F4Q16254 413 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 HSF5Q4G112 596 aaPredicted RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 USP39Q53GS9 565 aaKnown RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 N4BP2L1Q5TBK1 243 aaPredicted RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 RNF43Q68DV7 783 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 CNNM4Q6P4Q7 775 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 EPM2AIP1Q7L775 607 aaPredicted RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 PDILTQ8N807 584 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 LINC00301Q8NCQ3 95 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 GLIS3Q8NEA6 775 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 ZNF507Q8TCN5 953 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 CHAMP1Q96JM3 812 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 CNOT6LQ96LI5 555 aaKnown RBP12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 MMS19Q96T76 1030 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 MTMR6Q9Y217 621 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 UBE4BO95155 1302 aa12.81□□□□□ -0.36
CBX3P4-202ENST00000540428 RALGAPA1Q6GYQ0 2036 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 F8VP50 259 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 K7EQS6 105 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 PPP6R2O75170 966 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 STAU1O95793 577 aaKnown RBP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 CAVIN2O95810 425 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 OAS1P00973 400 aaKnown RBP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 CENPBP07199 599 aaPredicted RBP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 PDGFRBP09619 1106 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 TNNI1P19237 187 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 KCNA4P22459 653 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 HOXD13P35453 343 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 DGKEP52429 567 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 MRPS21P82921 87 aaKnown RBP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 CREB5Q02930 508 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 PSMD6Q15008 389 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 STK38Q15208 465 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 SNRNP35Q16560 246 aaKnown RBP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 GAB4Q2WGN9 574 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 MDH1BQ5I0G3 518 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 PMS2CLQ68D20 193 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 DDX42Q86XP3 938 aaKnown RBP eCLIP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 ADGRG2Q8IZP9 1017 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 SLITRK1Q96PX8 696 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 FNBP1Q96RU3 617 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 CGRRF1Q99675 332 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 MRPL45Q9BRJ2 306 aaKnown RBP12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 EDEM2Q9BV94 578 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 ELOVL4Q9GZR5 314 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 SNX25Q9H3E2 840 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 SMOC1Q9H4F8 434 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 AGPAT3Q9NRZ7 376 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 MMP17Q9ULZ9 603 aa12.8□□□□□ -0.36
CBX3P4-202ENST00000540428 SPAG17Q6Q759 2223 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 SDK1Q7Z5N4 2213 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 DCLK1O15075 740 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 SPTLC2O15270 562 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 TGFB1I1O43294 461 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 KCNK5O95279 499 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 CST3P01034 146 aaPredicted RBP12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 CYP17A1P05093 508 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 DLATP10515 647 aaKnown RBP12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 PTPN1P18031 435 aaKnown RBP12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 ATICP31939 592 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 GBP1P32455 592 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 TNNC1P63316 161 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 ASIC1P78348 528 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 CYP24A1Q07973 514 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 TAF10Q12962 218 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 DHCR24Q15392 516 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 CRY1Q16526 586 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 WDR72Q3MJ13 1102 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 FAM26FQ5R3K3 315 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 TDRD10Q5VZ19 366 aaKnown RBP12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 TCEAL6Q6IPX3 200 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 HS2ST1Q7LGA3 356 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 FILIP1Q7Z7B0 1213 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 IQUBQ8NA54 791 aa12.79□□□□□ -0.36
CBX3P4-202ENST00000540428 XXYLT1Q8NBI6 393 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms