RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 CDH9Q9ULB4 789 aa13.3□□□□□ -0.28
PRKDC-207ENST00000536483 NUP210Q8TEM1 1887 aaPredicted RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 TULP1O00294 542 aaPredicted RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 KRT37O76014 449 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 ADRB1P08588 477 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 HMGA1P17096 107 aaKnown RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 RPL13P26373 211 aaKnown RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 HOXA6P31267 233 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 PXNP49023 591 aaPredicted RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 CASP4P49662 377 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 MAPRE1Q15691 268 aaKnown RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 PPM1JQ5JR12 505 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 ZNF658Q5TYW1 1059 aaPredicted RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 TDRD10Q5VZ19 366 aaKnown RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 TRIM68Q6AZZ1 485 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 PKN3Q6P5Z2 889 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 TMEM150AQ86TG1 271 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 WDR5BQ86VZ2 330 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 ZC3H3Q8IXZ2 948 aaKnown RBP13.29□□□□□ -0.28
PRKDC-207ENST00000536483 MAB21L3Q8N8X9 362 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 STKLD1Q8NE28 680 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 TAF4BQ92750 862 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 MYRFLQ96LU7 910 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 FAM83CQ9BQN1 747 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 CCL26Q9Y258 94 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 FRMD4BQ9Y2L6 1034 aa13.29□□□□□ -0.28
PRKDC-207ENST00000536483 OTOL1A6NHN0 477 aaPredicted RBP13.28□□□□□ -0.28
PRKDC-207ENST00000536483 AXIN1O15169 862 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 AKAP3O75969 853 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 SMC2O95347 1197 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 VNN1O95497 513 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 F11P03951 625 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 NR2F2P24468 414 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 LMO2P25791 158 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 AVPR1AP37288 418 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 GPR15P49685 360 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 NLRP12P59046 1061 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 MYL6P60660 151 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 PNOCQ13519 176 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 RUNX3Q13761 415 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 WDR72Q3MJ13 1102 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 FSTL4Q6MZW2 842 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 FOXR2Q6PJQ5 311 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 VSTM1Q6UX27 236 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 INTS8Q75QN2 995 aaKnown RBP13.28□□□□□ -0.28
PRKDC-207ENST00000536483 USP13Q92995 863 aaPredicted RBP13.28□□□□□ -0.28
PRKDC-207ENST00000536483 TRMT2BQ96GJ1 504 aaKnown RBP13.28□□□□□ -0.28
PRKDC-207ENST00000536483 FAXDC2Q96IV6 333 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 PI4K2AQ9BTU6 479 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 EBF3Q9H4W6 596 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 HPS4Q9NQG7 708 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 HOOK1Q9UJC3 728 aaKnown RBP13.28□□□□□ -0.28
PRKDC-207ENST00000536483 GTF3C4Q9UKN8 822 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 MAGED2Q9UNF1 606 aaPredicted RBP13.28□□□□□ -0.28
PRKDC-207ENST00000536483 PCDHA5Q9Y5H7 936 aa13.28□□□□□ -0.28
PRKDC-207ENST00000536483 KIF26AQ9ULI4 1882 aaPredicted RBP13.27□□□□□ -0.28
PRKDC-207ENST00000536483 RALGAPA1Q6GYQ0 2036 aa13.27□□□□□ -0.28
PRKDC-207ENST00000536483 NOL4O94818 638 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 GTF2H1P32780 548 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 GNL1P36915 607 aaPredicted RBP13.27□□□□□ -0.29
PRKDC-207ENST00000536483 RPL10AP62906 217 aaKnown RBP13.27□□□□□ -0.29
PRKDC-207ENST00000536483 DLG4P78352 724 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 GRSF1Q12849 480 aaKnown RBP eCLIP13.27□□□□□ -0.297e-12■■■■■ 62.7
PRKDC-207ENST00000536483 ADAM9Q13443 819 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 TRPC3Q13507 836 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 NCOA4Q13772 614 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 CCDC6Q16204 474 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 SGSM1Q2NKQ1 1148 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 TMEM196Q5HYL7 178 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 SDHAF4Q5VUM1 108 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 TXNDC8Q6A555 127 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 C4orf50Q6ZRC1 276 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 SV2AQ7L0J3 742 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 RIN3Q8TB24 985 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 MYCBPAPQ8TBZ2 947 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 CHFRQ96EP1 664 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 SPATA17Q96L03 361 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 SYT15Q9BQS2 421 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 ARRDC1-AS1Q9H2J1 176 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 FBRSL1Q9HCM7 1045 aaKnown RBP13.27□□□□□ -0.29
PRKDC-207ENST00000536483 CRTAC1Q9NQ79 661 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 TDP1Q9NUW8 608 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 POLR3BQ9NW08 1133 aaPredicted RBP13.27□□□□□ -0.29
PRKDC-207ENST00000536483 NME7Q9Y5B8 376 aa13.27□□□□□ -0.29
PRKDC-207ENST00000536483 CNOT1A5YKK6 2376 aaKnown RBP13.27□□□□□ -0.29
PRKDC-207ENST00000536483 TRDMT1O14717 391 aaKnown RBP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 FOXD2O60548 495 aaPredicted RBP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 RPP40O75818 363 aaKnown RBP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 ASS1P00966 412 aaKnown RBP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 CSH1P0DML2 217 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 CSH2P0DML3 217 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 ARSAP15289 507 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 KCNA4P22459 653 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 ACAT1P24752 427 aaKnown RBP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 CYP2F1P24903 491 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 DDX6P26196 483 aaKnown RBP eCLIP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 PSMC2P35998 433 aaKnown RBP13.26□□□□□ -0.29
PRKDC-207ENST00000536483 PRCPP42785 496 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 VAMP7P51809 220 aa13.26□□□□□ -0.29
PRKDC-207ENST00000536483 SF3A2Q15428 464 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms