RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 M0QYG6 137 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 DCLK1O15075 740 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 ERC2O15083 957 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 GPR39O43194 453 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 CNOT3O75175 753 aaKnown RBP3.14□□□□□ -1.91
SKA3-207ENST00000536239 TULP3O75386 442 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 GAS8-AS1O95177 125 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 PRDX5P30044 214 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 LOXL3P58215 753 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 ID2Q02363 134 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 KLF1Q13351 362 aaPredicted RBP3.14□□□□□ -1.91
SKA3-207ENST00000536239 RNASE12Q5GAN4 147 aaKnown RBP3.14□□□□□ -1.91
SKA3-207ENST00000536239 LAYNQ6UX15 382 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 TTC7BQ86TV6 843 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 FAM90A1Q86YD7 464 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.14□□□□□ -1.91
SKA3-207ENST00000536239 FAM46DQ8NEK8 389 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 COG1Q8WTW3 980 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 ANP32BQ92688 251 aaKnown RBP3.14□□□□□ -1.91
SKA3-207ENST00000536239 MAP4K1Q92918 833 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 ZPBPQ9BS86 351 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 CHMP4BQ9H444 224 aaKnown RBP3.14□□□□□ -1.91
SKA3-207ENST00000536239 MLXIPQ9HAP2 919 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 ASIC5Q9NY37 505 aa3.14□□□□□ -1.91
SKA3-207ENST00000536239 TRIP12Q14669 1992 aaPredicted RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 KRTAP9-6A8MVA2 160 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 SLC28A2O43868 658 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 GNAI2P04899 355 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 FTH1P19P0C7X4 201 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 FPR3P25089 353 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 THBS4P35443 961 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 ANP32AP39687 249 aaKnown RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 PXNP49023 591 aaPredicted RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 DSC2Q02487 901 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 GSG1LQ6UXU4 331 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 BCDIN3DQ7Z5W3 292 aaKnown RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 SPATS2Q86XZ4 545 aaKnown RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 PNISRQ8TF01 805 aaKnown RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 SOCS4Q8WXH5 440 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 COA7Q96BR5 231 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 ZFYVE19Q96K21 471 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 CCDC17Q96LX7 622 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 MMS19Q96T76 1030 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 TTYH3Q9C0H2 523 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 TRMT13Q9NUP7 481 aaKnown RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 HESX1Q9UBX0 185 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 ZDHHC8Q9ULC8 765 aa3.13□□□□□ -1.91
SKA3-207ENST00000536239 CFAP20Q9Y6A4 193 aaKnown RBP3.13□□□□□ -1.91
SKA3-207ENST00000536239 LACTBL1A8MY62 500 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 ENPP3O14638 875 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 CLGNO14967 610 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 GCATO75600 419 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 PRKCBP05771 671 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 ATXN1LP0C7T5 689 aaKnown RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 MYCLP12524 364 aaPredicted RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 CPEP16870 476 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 FXR1P51114 621 aaKnown RBP eCLIP3.12□□□□□ -1.91
SKA3-207ENST00000536239 LILRA4P59901 499 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 E2F2Q14209 437 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 LONRF3Q496Y0 759 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 RGS7BPQ6MZT1 257 aaPredicted RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 TICAM2Q86XR7 235 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 ANKRD13BQ86YJ7 626 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 SMAP1Q8IYB5 467 aaPredicted RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 WDR66Q8TBY9 1149 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 CHAC2Q8WUX2 184 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 NR4A3Q92570 626 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 UBXN4Q92575 508 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 TNPO1Q92973 898 aaKnown RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 SECISBP2LQ93073 1101 aaKnown RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 MAP7D2Q96T17 732 aa3.12□□□□□ -1.91
SKA3-207ENST00000536239 DPCDQ9BVM2 203 aaPredicted RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 NDRG4Q9ULP0 352 aaKnown RBP3.12□□□□□ -1.91
SKA3-207ENST00000536239 SHROOM4Q9ULL8 1493 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 RNF8O76064 485 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 PTMAP06454 111 aaKnown RBP3.11□□□□□ -1.91
SKA3-207ENST00000536239 TPM2P07951 284 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 CTSAP10619 480 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 PIM1P11309 404 aaPredicted RBP3.11□□□□□ -1.91
SKA3-207ENST00000536239 PTMSP20962 102 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 ZXDBP98169 803 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 IQCB1Q15051 598 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 ACAP2Q15057 778 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 TAF3Q5VWG9 929 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 PGM2L1Q6PCE3 622 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 RFX6Q8HWS3 928 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 LIX1LQ8IVB5 337 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 C3orf20Q8ND61 904 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 B4GALNT2Q8NHY0 566 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 MPLKIPQ8TAP9 179 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 WBP1Q96G27 269 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 DRC1Q96MC2 740 aa3.11□□□□□ -1.91
SKA3-207ENST00000536239 LRRC14BA6NHZ5 514 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 AP4M1O00189 453 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 CLSTN1O94985 981 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 MCCP23508 829 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 MMP14P50281 582 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 RPS13P62277 151 aaKnown RBP3.1□□□□□ -1.91
SKA3-207ENST00000536239 E2F1Q01094 437 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 KIF23Q02241 960 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms