RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 F8VP50 259 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 FOXD2O60548 495 aaPredicted RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 TACC1O75410 805 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 RPP40O75818 363 aaKnown RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 NFATC1O95644 943 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 EGFP01133 1207 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 PFKLP17858 780 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 PTPN1P18031 435 aaKnown RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 ATICP31939 592 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 PPP3CCP48454 512 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 PXNP49023 591 aaPredicted RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 AP3M2P53677 418 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 ATXN1P54253 815 aaKnown RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 CUL4BQ13620 913 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 ZNF77Q15935 545 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 TDRD10Q5VZ19 366 aaKnown RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 RESP18Q5W5W9 173 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 SPRYD3Q8NCJ5 442 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 CD101Q93033 1021 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 CHFRQ96EP1 664 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 SLITRK1Q96PX8 696 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 RTKNQ9BST9 563 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 PARD6AQ9NPB6 346 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 SEMA4GQ9NTN9 838 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 EXOC1Q9NV70 894 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 ARHGAP26Q9UNA1 814 aa15.71■□□□□ 0.11
VPS28-215ENST00000531924 DCHS1Q96JQ0 3298 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 ATP8B3O60423 1300 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.7■□□□□ 0.1
VPS28-215ENST00000531924 MYL6P60660 151 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 IFRD2Q12894 506 aaPredicted RBP15.7■□□□□ 0.1
VPS28-215ENST00000531924 USP4Q13107 963 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 CSRP2Q16527 193 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 BMT2Q1RMZ1 405 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 CACNA2D4Q7Z3S7 1137 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 C12orf56Q8IXR9 622 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 CAMKK1Q8N5S9 505 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 FAM160A2Q8N612 972 aaPredicted RBP15.7■□□□□ 0.1
VPS28-215ENST00000531924 RIN3Q8TB24 985 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 GAB3Q8WWW8 586 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 C8orf48Q96LL4 319 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 MED10Q9BTT4 135 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 GCNT4Q9P109 453 aa15.7■□□□□ 0.1
VPS28-215ENST00000531924 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.7■□□□□ 0.1
VPS28-215ENST00000531924 CACNA1AO00555 2505 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 CCDC163A0A0D9SF12 145 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 SLFN14P0C7P3 912 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 P4HA1P13674 534 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 TGM1P22735 817 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 USP46P62068 366 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 NOP14P78316 857 aaKnown RBP15.69■□□□□ 0.1
VPS28-215ENST00000531924 DNM1Q05193 864 aaKnown RBP15.69■□□□□ 0.1
VPS28-215ENST00000531924 ZNF699Q32M78 642 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 EML3Q32P44 896 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 ZNF667Q5HYK9 610 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 PKN3Q6P5Z2 889 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 GRAMD1CQ8IYS0 662 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 B3GALNT2Q8NCR0 500 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 RPLP0P6Q8NHW5 317 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 NETO1Q8TDF5 533 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 ACDQ96AP0 544 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 FBRSL1Q9HCM7 1045 aaKnown RBP15.69■□□□□ 0.1
VPS28-215ENST00000531924 SERTAD1Q9UHV2 236 aa15.69■□□□□ 0.1
VPS28-215ENST00000531924 CEP250Q9BV73 2442 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 DCDC2BA2VCK2 349 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 ZNF840PA6NDX5 716 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 LEFTY2O00292 366 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 SLC9A3R1O14745 358 aaPredicted RBP15.68■□□□□ 0.1
VPS28-215ENST00000531924 AXIN1O15169 862 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 STAU1O95793 577 aaKnown RBP15.68■□□□□ 0.1
VPS28-215ENST00000531924 TRIM21P19474 475 aaKnown RBP15.68■□□□□ 0.1
VPS28-215ENST00000531924 CASP4P49662 377 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 EHHADHQ08426 723 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 TAF10Q12962 218 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 NCOA4Q13772 614 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 PRR23CQ6ZRP0 262 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 NUP93Q8N1F7 819 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 C12orf50Q8NA57 414 aaPredicted RBP15.68■□□□□ 0.1
VPS28-215ENST00000531924 ZNF516Q92618 1163 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 CCDC47Q96A33 483 aaKnown RBP15.68■□□□□ 0.1
VPS28-215ENST00000531924 PAGE5Q96GU1 130 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 TNIP3Q96KP6 325 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 HHIPQ96QV1 700 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 TTLL2Q9BWV7 592 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 ZNF518BQ9C0D4 1074 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 LINC00597Q9H2U6 94 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 DPEP3Q9H4B8 488 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 SMPD4Q9NXE4 827 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 RCOR1Q9UKL0 485 aa15.68■□□□□ 0.1
VPS28-215ENST00000531924 AKAP3O75969 853 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 RTN3O95197 1032 aaPredicted RBP15.67■□□□□ 0.1
VPS28-215ENST00000531924 APBB3O95704 486 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 MBL2P11226 248 aaPredicted RBP15.67■□□□□ 0.1
VPS28-215ENST00000531924 TCF3P15923 654 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 YWHAQP27348 245 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 HOXC13P31276 330 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 SLC7A9P82251 487 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 AASDHQ4L235 1098 aaPredicted RBP15.67■□□□□ 0.1
VPS28-215ENST00000531924 NAIF1Q69YI7 327 aaPredicted RBP15.67■□□□□ 0.1
VPS28-215ENST00000531924 SCARA5Q6ZMJ2 495 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms