RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TP63Q9H3D4 680 aaPredicted RBP3.48□□□□□ -1.85
CD44-234ENST00000531873 FAM83DQ9H4H8 585 aa3.48□□□□□ -1.85
CD44-234ENST00000531873 MAP3K20Q9NYL2 800 aaKnown RBP3.48□□□□□ -1.85
CD44-234ENST00000531873 PPP4R1LQ9P1A2 415 aa3.48□□□□□ -1.85
CD44-234ENST00000531873 HERC5Q9UII4 1024 aaKnown RBP3.48□□□□□ -1.85
CD44-234ENST00000531873 SHOC2Q9UQ13 582 aa3.48□□□□□ -1.85
CD44-234ENST00000531873 HPSEQ9Y251 543 aa3.48□□□□□ -1.85
CD44-234ENST00000531873 MRPS17Q9Y2R5 130 aaKnown RBP3.48□□□□□ -1.85
CD44-234ENST00000531873 CRYL1Q9Y2S2 319 aa3.48□□□□□ -1.85
CD44-234ENST00000531873 CHST2Q9Y4C5 530 aa3.48□□□□□ -1.85
CD44-234ENST00000531873 AQP7P3A6NL99 342 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ADM5C9JUS6 153 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 AGPSO00116 658 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ZNF185O15231 689 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 SRGAP2O75044 1071 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 MFAP3LO75121 409 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 USP1O94782 785 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ACTL6BO94805 426 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 POLBP06746 335 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ELANEP08246 267 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 KCNA2P16389 499 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 FGFR4P22455 802 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 BDNFP23560 247 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 CNTFP26441 200 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 KLRK1P26718 216 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 PXNP49023 591 aaPredicted RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 DGKEP52429 567 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ZXDAP98168 799 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 NHLH2Q02577 135 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ZNF844Q08AG5 666 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 TBX2Q13207 712 aaPredicted RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 FAM110CQ1W6H9 321 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 TRIM71Q2Q1W2 868 aaKnown RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 PTCHD3Q3KNS1 767 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 TSHZ3Q63HK5 1081 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ABLIM2Q6H8Q1 611 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 KLHL17Q6TDP4 642 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 TMEM108Q6UXF1 575 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 SLC44A2Q8IWA5 706 aaPredicted RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 FTSJ3Q8IY81 847 aaKnown RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 D2HGDHQ8N465 521 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 PPHLN1Q8NEY8 458 aaKnown RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 OR56A1Q8NGH5 318 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 THAP4Q8WY91 577 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 SKA1Q96BD8 255 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 MIEF2Q96C03 454 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 FAM227BQ96M60 508 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 GPR20Q99678 358 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 RTKNQ9BST9 563 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 TEX101Q9BY14 249 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 SLC25A32Q9H2D1 315 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 ZBTB26Q9HCK0 441 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 FSCN3Q9NQT6 498 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 NDRG4Q9ULP0 352 aaKnown RBP3.47□□□□□ -1.85
CD44-234ENST00000531873 CA14Q9ULX7 337 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 RAD54BQ9Y620 910 aa3.47□□□□□ -1.85
CD44-234ENST00000531873 A0A1B0GTW7 788 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 GRXCR1A8MXD5 290 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 CD3EAPO15446 510 aaKnown RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 GPR42O15529 346 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 DNPH1O43598 174 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 RASAL1O95294 804 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 NTSR2O95665 410 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 ANXA6P08133 673 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 SPATA31D3P0C874 917 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 TNFAIP3P21580 790 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 LRPAP1P30533 357 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 ADD2P35612 726 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 RNASE9P60153 205 aaKnown RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 AP2B1P63010 937 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 HSD11B2P80365 405 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 MPP1Q00013 466 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 GPS1Q13098 491 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 CUL4BQ13620 913 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 ATP1A4Q13733 1029 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 CNGB1Q14028 1251 aaPredicted RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 EFR3AQ14156 821 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 GRM4Q14833 912 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 SURF1Q15526 300 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 BTBD16Q32M84 506 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 TRIM60Q495X7 471 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 PDCD4Q53EL6 469 aaKnown RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 Q6ZRM9 215 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 SPATA31D4Q6ZUB0 917 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 C2CD5Q86YS7 1000 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 NME8Q8N427 588 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 FAM109AQ8N4B1 249 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.46□□□□□ -1.86
CD44-234ENST00000531873 SLC30A5Q8TAD4 765 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 DNAJB14Q8TBM8 379 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 CPT1CQ8TCG5 803 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 SMCR8Q8TEV9 937 aaPredicted RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 TMEM171Q8WVE6 324 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 SORCS2Q96PQ0 1159 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 WDR24Q96S15 920 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 RBM15Q96T37 977 aaKnown RBP eCLIP3.46□□□□□ -1.86
CD44-234ENST00000531873 PYM1Q9BRP8 204 aaKnown RBP3.46□□□□□ -1.86
CD44-234ENST00000531873 BDH2Q9BUT1 245 aa3.46□□□□□ -1.86
CD44-234ENST00000531873 TRIM5Q9C035 493 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms