RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 APOC2P02655 101 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 ERBB2P04626 1255 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 GM2AP17900 193 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 PROZP22891 400 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 OSTNP61366 133 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 RNASELQ05823 741 aaKnown RBP20.15■□□□□ 0.82
VPS28-213ENST00000530983 ORC1Q13415 861 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 FYB2Q5VWT5 728 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 IER5Q5VY09 327 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 PALM2Q8IXS6 379 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 PDIK1LQ8N165 341 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 LRRC71Q8N4P6 559 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 CEP120Q8N960 986 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 CHST13Q8NET6 341 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 WDR90Q96KV7 1748 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 PEX11AO75192 247 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 EPHB2P29323 1055 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 RAD23BP54727 409 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 EIF3EP60228 445 aaKnown RBP20.15■□□□□ 0.82
VPS28-213ENST00000530983 CTC1Q2NKJ3 1217 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 MTDHQ86UE4 582 aaKnown RBP20.15■□□□□ 0.82
VPS28-213ENST00000530983 RFX6Q8HWS3 928 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 IGDCC3Q8IVU1 814 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 KCTD6Q8NC69 237 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 CMASQ8NFW8 434 aaPredicted RBP20.15■□□□□ 0.82
VPS28-213ENST00000530983 ZNF398Q8TD17 642 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 PTPRN2Q92932 1015 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 ZFP69BQ9UJL9 534 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 CHMP2BQ9UQN3 213 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 MED7O43513 233 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 B4GALT4O60513 344 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 TNNC2P02585 160 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 MIPP30301 263 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 GCKP35557 465 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 CDH8P55286 799 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 BASP1P80723 227 aaKnown RBP20.14■□□□□ 0.82
VPS28-213ENST00000530983 OVGP1Q12889 678 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 SEPT7Q16181 437 aaKnown RBP20.14■□□□□ 0.82
VPS28-213ENST00000530983 DALRD3Q5D0E6 543 aaKnown RBP20.14■□□□□ 0.82
VPS28-213ENST00000530983 CLNKQ7Z7G1 428 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 LONP2Q86WA8 852 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 ZBTB8OSQ8IWT0 167 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 TMEM130Q8N3G9 435 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 RFWD2Q8NHY2 731 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 VPS11Q9H270 941 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 RNPEPL1Q9HAU8 725 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 PTPRHQ9HD43 1115 aa20.14■□□□□ 0.82
VPS28-213ENST00000530983 ZBTB42B2RXF5 422 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 SMNDC1O75940 238 aaKnown RBP eCLIP20.14■□□□□ 0.81
VPS28-213ENST00000530983 RBP3P10745 1247 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 MARK3P27448 753 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 DPYSL3Q14195 570 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 MPZL3Q6UWV2 235 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 TSHZ1Q6ZSZ6 1077 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 CDR2LQ86X02 465 aaPredicted RBP20.14■□□□□ 0.81
VPS28-213ENST00000530983 SEPT1Q8WYJ6 367 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 HSPH1Q92598 858 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 ALKBH8Q96BT7 664 aaKnown RBP20.14■□□□□ 0.81
VPS28-213ENST00000530983 ANKRD36BP1Q96IX9 119 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 BCO2Q9BYV7 579 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 SDCBP2Q9H190 292 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 SYNCQ9H7C4 482 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 DCTN4Q9UJW0 460 aa20.14■□□□□ 0.81
VPS28-213ENST00000530983 SMAPO00193 183 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 NFKBIEO00221 500 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 TSHRP16473 764 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 GNAZP19086 355 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 EDNRBP24530 442 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 RASSF2P50749 326 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 MXD4Q14582 209 aaPredicted RBP20.13■□□□□ 0.81
VPS28-213ENST00000530983 TRIM50Q86XT4 487 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 KLRG1Q96E93 195 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 TWNKQ96RR1 684 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 MANSC1Q9H8J5 431 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 WDR35Q9P2L0 1181 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 HMGXB4Q9UGU5 601 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 SIX4Q9UIU6 781 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 SOWAHBA6NEL2 793 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 MCF2LO15068 1137 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 B4GALT5O43286 388 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 KRT19P08727 400 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 TROVE2P10155 538 aaKnown RBP eCLIP20.13■□□□□ 0.81
VPS28-213ENST00000530983 ELK3P41970 407 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 METTL7BQ6UX53 244 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 TMEM192Q8IY95 271 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 ARMC2Q8NEN0 867 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 SPATA18Q8TC71 538 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 KCNV2Q8TDN2 545 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 ZNF483Q8TF39 744 aaPredicted RBP20.13■□□□□ 0.81
VPS28-213ENST00000530983 ZNF668Q96K58 619 aaPredicted RBP20.13■□□□□ 0.81
VPS28-213ENST00000530983 CYTH2Q99418 400 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 CALN1Q9BXU9 219 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 ALG13Q9NP73 1137 aaKnown RBP20.13■□□□□ 0.81
VPS28-213ENST00000530983 LNPEPQ9UIQ6 1025 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 USP18Q9UMW8 372 aa20.13■□□□□ 0.81
VPS28-213ENST00000530983 A0A0G2JMZ2 1700 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 LRRC37A2A6NM11 1700 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 TRUB2O95900 331 aaKnown RBP20.12■□□□□ 0.81
VPS28-213ENST00000530983 CALB2P22676 271 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 LY6KQ17RY6 165 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms