RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PDE1AP54750 535 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 EEFSECP57772 596 aaKnown RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 RPS16P62249 146 aaKnown RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 FMO1Q01740 532 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 CNGA2Q16280 664 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 CYP1B1Q16678 543 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 TMEM119Q4V9L6 283 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 SLC9A4Q6AI14 798 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 CCDC149Q6ZUS6 474 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 Q6ZWC4 215 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 WDR53Q7Z5U6 358 aaPredicted RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 SESTD1Q86VW0 696 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 SRRM1Q8IYB3 904 aaKnown RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 LRRC71Q8N4P6 559 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 XAGE5Q8WWM1 108 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 LRTOMTQ8WZ04 291 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 DDB2Q92466 427 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 TBC1D5Q92609 795 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 PPP2R3CQ969Q6 453 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 NMD3Q96D46 503 aaKnown RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 SUCLG2Q96I99 432 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 FSD1LQ9BXM9 530 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 GBA2Q9HCG7 927 aaPredicted RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 SH3BP4Q9P0V3 963 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 TPCN1Q9ULQ1 816 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 GABRQQ9UN88 632 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 TNFRSF18Q9Y5U5 241 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 FRMPD2Q68DX3 1309 aaPredicted RBP4.96□□□□□ -1.62
CD44-217ENST00000525348 MBD3L4A6NDZ8 208 aaPredicted RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 MBD3L3A6NE82 208 aaPredicted RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 LINC01548A6NM66 108 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 ISM1B1AKI9 464 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 PYCARD-AS1I3L0S3 204 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 TJP3O95049 919 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 MYF5P13349 255 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 PRKAG1P54619 331 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 KIAA0753Q2KHM9 967 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 PROSER3Q2NL68 480 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 GFOD2Q3B7J2 385 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 PCID2Q5JVF3 399 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 CEP85Q6P2H3 762 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 NAPRTQ6XQN6 538 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 PARS2Q7L3T8 475 aaKnown RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 IZUMO1Q8IYV9 350 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 TIFAQ96CG3 184 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 APIPQ96GX9 242 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 LENG8Q96PV6 779 aaPredicted RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 THAP7Q9BT49 309 aaPredicted RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 A1CFQ9NQ94 594 aaKnown RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 DNMT3BQ9UBC3 853 aaKnown RBP4.95□□□□□ -1.62
CD44-217ENST00000525348 ADAMTS5Q9UNA0 930 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 CDY1Q9Y6F8 540 aa4.95□□□□□ -1.62
CD44-217ENST00000525348 COL3A1P02461 1466 aaPredicted RBP4.94□□□□□ -1.62
CD44-217ENST00000525348 TISP43B9A030 160 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 H7C4K7 107 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 QSOX1O00391 747 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 PDE8BO95263 885 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 RHCEP18577 417 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 KLRC1P26715 233 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 PEX2P28328 305 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 CACNB3P54284 484 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 RHDQ02161 417 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 POLD3Q15054 466 aaPredicted RBP4.94□□□□□ -1.62
CD44-217ENST00000525348 ZNF66Q6ZN08 573 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 PTF1AQ7RTS3 328 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 SLC29A4Q7RTT9 530 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 SRGAP1Q7Z6B7 1085 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 CAND1Q86VP6 1230 aaKnown RBP4.94□□□□□ -1.62
CD44-217ENST00000525348 FMNL3Q8IVF7 1028 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 WDR75Q8IWA0 830 aaKnown RBP4.94□□□□□ -1.62
CD44-217ENST00000525348 FANCBQ8NB91 859 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 RP9Q8TA86 221 aaKnown RBP4.94□□□□□ -1.62
CD44-217ENST00000525348 DNAJB14Q8TBM8 379 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 SPSB4Q96A44 273 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 PRR25Q96S07 402 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 C17orf80Q9BSJ5 609 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 STK31Q9BXU1 1019 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 XPNPEP3Q9NQH7 507 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 AFF4Q9UHB7 1163 aaKnown RBP4.94□□□□□ -1.62
CD44-217ENST00000525348 PCDHGB6Q9Y5F9 930 aa4.94□□□□□ -1.62
CD44-217ENST00000525348 GOLIM4O00461 696 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 SRGAP2O75044 1071 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 JTBO76095 146 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 LATS1O95835 1130 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 PRKCGP05129 697 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 ZKSCAN1P17029 563 aaPredicted RBP4.93□□□□□ -1.62
CD44-217ENST00000525348 ATF3P18847 181 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 FPR3P25089 353 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 TPTEP56180 551 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 E2F1Q01094 437 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 SATB1Q01826 763 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 SRSF4Q08170 494 aaKnown RBP4.93□□□□□ -1.62
CD44-217ENST00000525348 SEMA5AQ13591 1074 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 NPY5RQ15761 445 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 ZKSCAN2Q63HK3 967 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 FCRL6Q6DN72 434 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 SUMO4Q6EEV6 95 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 DARS2Q6PI48 645 aaKnown RBP4.93□□□□□ -1.62
CD44-217ENST00000525348 SEMA6DQ8NFY4 1073 aa4.93□□□□□ -1.62
CD44-217ENST00000525348 GOLGA6CA6NDK9 693 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms