RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 PDE8BO95263 885 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 VNN1O95497 513 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 LATS1O95835 1130 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 NPSP0C0P6 89 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PRR35P0CG20 571 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 KCNA3P22001 575 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PDE6CP51160 858 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 DGKEP52429 567 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 AGFG1P52594 562 aaKnown RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 ARFIP2P53365 341 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PRKAG1P54619 331 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 WNT3P56703 355 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TUBA4AP68366 448 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 GPSM2P81274 684 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 HOXA4Q00056 320 aaPredicted RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 FOXD4Q12950 439 aaPredicted RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 SLC13A2Q13183 592 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TBC1D25Q3MII6 688 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 ANO6Q4KMQ2 910 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 SLC44A4Q53GD3 710 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PLA1AQ53H76 456 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 MTX3Q5HYI7 312 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PAPD7Q5XG87 772 aaKnown RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 Q6ZWC4 215 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 OVCH2Q7RTZ1 564 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 GLCCI1Q86VQ1 547 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 ABRAQ8N0Z2 381 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 RP9Q8TA86 221 aaKnown RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 CYP2W1Q8TAV3 490 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TMEM171Q8WVE6 324 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 OSCP1Q8WVF1 389 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 KBTBD7Q8WVZ9 684 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PPP2R3CQ969Q6 453 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 CAMKK2Q96RR4 588 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 SH2D3AQ9BRG2 576 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 DPCDQ9BVM2 203 aaPredicted RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 FSD1LQ9BXM9 530 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 B3GNT5Q9BYG0 378 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 MS4A7Q9GZW8 240 aaPredicted RBP2.92□□□□□ -1.94
CD44-216ENST00000525293 TERF2IPQ9NYB0 399 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 PRRT4C9JH25 899 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 PHGDHO43175 533 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 PRPF3O43395 683 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 EXOC3O60645 756 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 MAP4K4O95819 1239 aaPredicted RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 DLDP09622 509 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 KELP23276 732 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 CTGFP29279 349 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 EPHB2P29323 1055 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 SLC7A1P30825 629 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 TPTEP56180 551 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 CEP78Q5JTW2 689 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 EPHA10Q5JZY3 1008 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 ODR4Q5SWX8 454 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 L1TD1Q5T7N2 865 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 ZNF626Q68DY1 528 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 SLC9A4Q6AI14 798 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 TRIM72Q6ZMU5 477 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 ZNF66Q6ZN08 573 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 MAEAQ7L5Y9 396 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 C1QL2Q7Z5L3 287 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 YTHDF3Q7Z739 585 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 CAND1Q86VP6 1230 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 CHSY1Q86X52 802 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 GAS2L3Q86XJ1 694 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 IZUMO1Q8IYV9 350 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 PNLDC1Q8NA58 520 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 ABHD11Q8NFV4 315 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 IL31RAQ8NI17 732 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 BPIFB1Q8TDL5 484 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 SCARB1Q8WTV0 552 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 SOCS4Q8WXH5 440 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 LENG8Q96PV6 779 aaPredicted RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 C17orf80Q9BSJ5 609 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 C1QTNF7Q9BXJ2 289 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 QTRT1Q9BXR0 403 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 MYH16Q9H6N6 1097 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 SMURF2Q9HAU4 748 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 ATP6V0A4Q9HBG4 840 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 GBA2Q9HCG7 927 aaPredicted RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 TRMT13Q9NUP7 481 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 ZSCAN32Q9NX65 697 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 ZNF70Q9UC06 446 aaPredicted RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 TBC1D30Q9Y2I9 924 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 THRAP3Q9Y2W1 955 aaKnown RBP2.91□□□□□ -1.94
CD44-216ENST00000525293 SNX14Q9Y5W7 946 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 FER1L4A9Z1Z3 1794 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 ZNF804BA4D1E1 1349 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 USP19O94966 1318 aa2.91□□□□□ -1.94
CD44-216ENST00000525293 CFAP69A5D8W1 941 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 CAPN8A6NHC0 703 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 AP4M1O00189 453 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 PPP6CO00743 305 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 EN2P19622 333 aaPredicted RBP2.9□□□□□ -1.95
CD44-216ENST00000525293 CERS1P27544 350 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 SUMO3P55854 103 aaPredicted RBP2.9□□□□□ -1.95
CD44-216ENST00000525293 SSBP2P81877 361 aaPredicted RBP2.9□□□□□ -1.95
CD44-216ENST00000525293 E2F1Q01094 437 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 RAB32Q13637 225 aa2.9□□□□□ -1.95
CD44-216ENST00000525293 LRRC41Q15345 812 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms