RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 LEFTY2O00292 366 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 NOL4O94818 638 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 FAM13AO94988 1023 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 KAT7O95251 611 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 PRB1P04280 392 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 KRT18P05783 430 aaKnown RBP12.49□□□□□ -0.41
SDCBP-211ENST00000523441 FTH1P19P0C7X4 201 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 CD59P13987 128 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 POLR2BP30876 1174 aaKnown RBP12.49□□□□□ -0.41
SDCBP-211ENST00000523441 MRPS21P82921 87 aaKnown RBP12.49□□□□□ -0.41
SDCBP-211ENST00000523441 SMARCB1Q12824 385 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 RESTQ13127 1097 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 NFE2Q16621 373 aaPredicted RBP12.49□□□□□ -0.41
SDCBP-211ENST00000523441 ZNF423Q2M1K9 1284 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 GAB4Q2WGN9 574 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 MAP7D1Q3KQU3 841 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 EOGTQ5NDL2 527 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 SCARA3Q6AZY7 606 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 SYT2Q8N9I0 419 aaPredicted RBP12.49□□□□□ -0.41
SDCBP-211ENST00000523441 SPATA18Q8TC71 538 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 CRELD1Q96HD1 420 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 REEP2Q9BRK0 252 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 TMEM206Q9H813 350 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 ARHGEF4Q9NR80 690 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 CYP8B1Q9UNU6 501 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 AGAP1Q9UPQ3 857 aa12.49□□□□□ -0.41
SDCBP-211ENST00000523441 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.49□□□□□ -0.41
SDCBP-211ENST00000523441 H0YCG3 227 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 ARHGAP33O14559 1287 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 AP5Z1O43299 807 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 EPB41L2O43491 1005 aaKnown RBP12.48□□□□□ -0.41
SDCBP-211ENST00000523441 ITGB3P05106 788 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 KRT19P08727 400 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 MAOBP27338 520 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 TOB1P50616 345 aaPredicted RBP12.48□□□□□ -0.41
SDCBP-211ENST00000523441 SLC12A3P55017 1021 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 ZXDBP98169 803 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 TFAMQ00059 246 aaKnown RBP12.48□□□□□ -0.41
SDCBP-211ENST00000523441 MYL7Q01449 175 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 ZNF33AQ06730 810 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 PLEKHG6Q3KR16 790 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 CCDC157Q569K6 752 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 ARSHQ5FYA8 562 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 OSTM1Q86WC4 334 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 GPBP1Q86WP2 473 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 CD302Q8IX05 232 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 PDCL2Q8N4E4 241 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 FAM184AQ8NB25 1140 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 GCNT4Q9P109 453 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 KCNG1Q9UIX4 513 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 L1RE1Q9UN81 338 aa12.48□□□□□ -0.41
SDCBP-211ENST00000523441 SHROOM3Q8TF72 1996 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 VWA3AA6NCI4 1184 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 HUS1O60921 280 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 ADAM23O75077 832 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 ATP2C2O75185 946 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 CAPNS1P04632 268 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 SERPINF2P08697 491 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 GRIK1P39086 918 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 USP46P62068 366 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 PSMC1P62191 440 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 BYSLQ13895 437 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 DHCR24Q15392 516 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 INTS6LQ5JSJ4 861 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 NAXDQ8IW45 347 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 TRIML1Q8N9V2 468 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 CEP76Q8TAP6 659 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 SETD7Q8WTS6 366 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 TRMT2BQ96GJ1 504 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 HSPA12BQ96MM6 686 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 ZNF560Q96MR9 790 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 CD93Q9NPY3 652 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 CALCOCO1Q9P1Z2 691 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 CFAP97Q9P2B7 532 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 AGO2Q9UKV8 859 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 ARHGAP26Q9UNA1 814 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 CPQQ9Y646 472 aa12.47□□□□□ -0.41
SDCBP-211ENST00000523441 SMG1Q96Q15 3661 aaKnown RBP12.47□□□□□ -0.41
SDCBP-211ENST00000523441 TBC1D3BA6NDS4 549 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 TRAK2O60296 914 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 ADRB2P07550 413 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 SYPP08247 313 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 ADH5P11766 374 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 GABRG2P18507 467 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 PLCG1P19174 1290 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 BDNFP23560 247 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 PAX3P23760 479 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 TRAPPC10P48553 1259 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 CYP27A1Q02318 531 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 MCTP1Q6DN14 999 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 SLC41A1Q8IVJ1 513 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 ZNF513Q8N8E2 541 aaPredicted RBP12.46□□□□□ -0.41
SDCBP-211ENST00000523441 FBXO18Q8NFZ0 1043 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 RASSF8Q8NHQ8 419 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 POMGNT1Q8WZA1 660 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 SAAL1Q96ER3 474 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 DCBLD2Q96PD2 775 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 TSPAN18Q96SJ8 248 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 RNF38Q9H0F5 515 aa12.46□□□□□ -0.41
SDCBP-211ENST00000523441 SLC6A17Q9H1V8 727 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms