RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 COL23A1Q86Y22 540 aaPredicted RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 DCP2Q8IU60 420 aaKnown RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 SCYL3Q8IZE3 742 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ADSSL1Q8N142 457 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 LZTR1Q8N653 840 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 RNF169Q8NCN4 708 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 FAM13CQ8NE31 585 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 LILRB4Q8NHJ6 448 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ZNF296Q8WUU4 475 aaPredicted RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 UBE2FQ969M7 185 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 CIDECQ96AQ7 238 aaPredicted RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ACSF2Q96CM8 615 aaPredicted RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ERP27Q96DN0 273 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 CDCA5Q96FF9 252 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 AIFM3Q96NN9 605 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 BTBD9Q96Q07 612 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ALPK1Q96QP1 1244 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 SRPK1Q96SB4 655 aaKnown RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 COQ7Q99807 217 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 DESI2Q9BSY9 194 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 LRRC1Q9BTT6 524 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 MRPS26Q9BYN8 205 aaKnown RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 STK33Q9BYT3 514 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ISCUQ9H1K1 167 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 TMEM60Q9H2L4 133 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ZHX3Q9H4I2 956 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 CCSER2Q9H7U1 834 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 TLE6Q9H808 572 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 KCNK12Q9HB15 430 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 XAB2Q9HCS7 855 aaKnown RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 GPR108Q9NPR9 543 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ABCF3Q9NUQ8 709 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 USP40Q9NVE5 1235 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ZDHHC7Q9NXF8 308 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 RRN3Q9NYV6 651 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 KCNN3Q9UGI6 736 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 RSL24D1Q9UHA3 163 aaKnown RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 CNOT7Q9UIV1 285 aaKnown RBP5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 GNPTGQ9UJJ9 305 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 CFL2Q9Y281 166 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 NOX1Q9Y5S8 564 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ZFYVE9O95405 1425 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 ABCA9Q8IUA7 1624 aa5.04□□□□□ -1.6
HMGB1P19-201ENST00000517578 KDM5AP29375 1690 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 A0A0B4J203 849 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 FAM237AA0A1B0GTK4 181 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 FAM172BPA6NC97 362 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CCDC160A6NGH7 325 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 TRIM64A6NGJ6 449 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 TRIM64BA6NI03 449 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 SIGLEC16A6NMB1 481 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 MIF4GDA9UHW6 222 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 FOXN3O00409 490 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 RGS13O14921 159 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 MUSKO15146 869 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 BET1O15155 118 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 SPTLC2O15270 562 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 EXTL3O43909 919 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 GPC4O75487 556 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 ECDO95905 644 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CLPTM1O96005 669 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 ESR1P03372 595 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CYP1A2P05177 515 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 KRT7P08729 469 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 ATP1A3P13637 1013 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 KRT5P13647 590 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 TCF3P15923 654 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 IL10P22301 178 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CFL1P23528 166 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 TBXAS1P24557 533 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 ADSLP30566 484 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 TTKP33981 857 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 MMP13P45452 471 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CBX5P45973 191 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CCT4P50991 539 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 AP3M2P53677 418 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 IST1P53990 364 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 POLGP54098 1239 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 GNG2P59768 71 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 STX1BP61266 288 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 NAA20P61599 178 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CYP4F2P78329 520 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 MRPS15P82914 257 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CYP4F3Q08477 520 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 SCRN3Q0VDG4 424 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 STX3Q13277 289 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 PRKG1Q13976 671 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 MPP2Q14168 576 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 KCTD2Q14681 263 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 SF3B3Q15393 1217 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 NFE2Q16621 373 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 PHKG1Q16816 387 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CDONQ4KMG0 1287 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 HABP4Q5JVS0 413 aaKnown RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 TCHHL1Q5QJ38 904 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 ANO1Q5XXA6 986 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 ZNF746Q6NUN9 644 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 NEK5Q6P3R8 708 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 AAGABQ6PD74 315 aa5.03□□□□□ -1.6
HMGB1P19-201ENST00000517578 CORO6Q6QEF8 472 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms