RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 DDX23Q9BUQ8 820 aaKnown RBP12.22□□□□□ -0.45
VCAN-212ENST00000515397 BCO2Q9BYV7 579 aa12.22□□□□□ -0.45
VCAN-212ENST00000515397 ELOVL4Q9GZR5 314 aa12.22□□□□□ -0.45
VCAN-212ENST00000515397 LTB4R2Q9NPC1 389 aa12.22□□□□□ -0.45
VCAN-212ENST00000515397 TDP1Q9NUW8 608 aa12.22□□□□□ -0.45
VCAN-212ENST00000515397 PIAS3Q9Y6X2 628 aa12.22□□□□□ -0.45
VCAN-212ENST00000515397 KMT2EQ8IZD2 1858 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 OTOL1A6NHN0 477 aaPredicted RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 ARNTLO00327 626 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 PSMA7O14818 248 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 TRIM66O15016 1216 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 CHADO15335 359 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 ARSAP15289 507 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 PGFP49763 221 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 MAP3K7CLP57077 242 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 ZXDBP98169 803 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 FCHO2Q0JRZ9 810 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 TAF10Q12962 218 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 FZD5Q13467 585 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 STIM1Q13586 685 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 ANGPT1Q15389 498 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 TTI2Q6NXR4 508 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 TXNDC11Q6PKC3 985 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 ZC3H3Q8IXZ2 948 aaKnown RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 CELF5Q8N6W0 485 aaKnown RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 CSGALNACT1Q8TDX6 532 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 TAF4BQ92750 862 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 E2F7Q96AV8 911 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 TRMT2BQ96GJ1 504 aaKnown RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 DHTKD1Q96HY7 919 aaPredicted RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 TNIP3Q96KP6 325 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 C8orf48Q96LL4 319 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 SMOQ99835 787 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 IMPG2Q9BZV3 1241 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 NIF3L1Q9GZT8 377 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 RNF38Q9H0F5 515 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 KCNH6Q9H252 994 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 EBF3Q9H4W6 596 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 KRT82Q9NSB4 513 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 RBM12Q9NTZ6 932 aaKnown RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 RAB20Q9NX57 234 aa12.21□□□□□ -0.45
VCAN-212ENST00000515397 UXTQ9UBK9 157 aaPredicted RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 ARMCX3Q9UH62 379 aaPredicted RBP12.21□□□□□ -0.45
VCAN-212ENST00000515397 PTPRZ1P23471 2315 aaPredicted RBP12.2□□□□□ -0.46
VCAN-212ENST00000515397 CKMP06732 381 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 HDCP19113 662 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 GTF2H1P32780 548 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 LRRC63Q05C16 580 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 CCDC40Q4G0X9 1142 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 NAIF1Q69YI7 327 aaPredicted RBP12.2□□□□□ -0.46
VCAN-212ENST00000515397 CREBRFQ8IUR6 639 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 NUP93Q8N1F7 819 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 CRYBG2Q8N1P7 616 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 FBXL13Q8NEE6 735 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 ZMIZ2Q8NF64 920 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 FAM3CQ92520 227 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 DNASE1L2Q92874 299 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 SLC35C1Q96A29 364 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 HEXIM2Q96MH2 286 aaKnown RBP12.2□□□□□ -0.46
VCAN-212ENST00000515397 SRRTQ9BXP5 876 aaKnown RBP12.2□□□□□ -0.46
VCAN-212ENST00000515397 LINC00597Q9H2U6 94 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 LMAN1LQ9HAT1 526 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 SMPD4Q9NXE4 827 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 TRPM5Q9NZQ8 1165 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 GCNT4Q9P109 453 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 KIAA1468Q9P260 1216 aa12.2□□□□□ -0.46
VCAN-212ENST00000515397 RIF1Q5UIP0 2472 aaKnown RBP12.19□□□□□ -0.46
VCAN-212ENST00000515397 TRAV19A0A0A6YYK7 116 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 ZNF840PA6NDX5 716 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 SLC16A3O15427 465 aaKnown RBP12.19□□□□□ -0.46
VCAN-212ENST00000515397 CILPO75339 1184 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 CALCAP01258 141 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 USP17L7P0C7H9 530 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 YWHAQP27348 245 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 HOXC13P31276 330 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 MRE11P49959 708 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 SLC5A3P53794 718 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 MCCD1P59942 119 aaPredicted RBP12.19□□□□□ -0.46
VCAN-212ENST00000515397 PON2Q15165 354 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 ARHGAP29Q52LW3 1261 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 WDR44Q5JSH3 913 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 TSSK4Q6SA08 328 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 GPRIN1Q7Z2K8 1008 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 FRMD5Q7Z6J6 570 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 FILIP1Q7Z7B0 1213 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 UNC93AQ86WB7 457 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 C1orf210Q8IVY1 113 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 CCDC150Q8NCX0 1101 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 SH3RF2Q8TEC5 729 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 FBXO32Q969P5 355 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 CYFIP2Q96F07 1278 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 MED15Q96RN5 788 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 PRRX2Q99811 253 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 TTLL2Q9BWV7 592 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 NT5C1AQ9BXI3 368 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 CYP3A43Q9HB55 503 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 DMAP1Q9NPF5 467 aaPredicted RBP12.19□□□□□ -0.46
VCAN-212ENST00000515397 HPS4Q9NQG7 708 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 CISHQ9NSE2 258 aa12.19□□□□□ -0.46
VCAN-212ENST00000515397 SPATA6Q9NWH7 488 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms