RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 MAP3K20Q9NYL2 800 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC78A2IDD5 438 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 EML1O00423 815 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 ENTPD5O75356 428 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 KRT75O95678 551 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 HSPA4LO95757 839 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 SESN2P58004 480 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 OVGP1Q12889 678 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 NOTUMQ6P988 496 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 LRP10Q7Z4F1 713 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 PLEKHH3Q7Z736 793 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 PATL1Q86TB9 770 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 PRPF39Q86UA1 669 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 TTC8Q8TAM2 541 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 UTP6Q9NYH9 597 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 WHRNQ9P202 907 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 SPDYE5A6NIY4 337 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 PAMP19021 973 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 NSUN2Q08J23 767 aaKnown RBP eCLIP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 SPATA20Q8TB22 786 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 USP33Q8TEY7 942 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 VPS39Q96JC1 886 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 CNBD2Q96M20 576 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 TSR3Q9UJK0 312 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 KBTBD13C9JR72 458 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 MAN1A2O60476 641 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 SLITRK3O94933 977 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 CPT1AP50416 773 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 USP4Q13107 963 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 TRADDQ15628 312 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 GPBP1L1Q9HC44 474 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 GBA2Q9HCG7 927 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 GOLGA8RI6L899 631 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 NAMPTP43490 491 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 HSPA13P48723 471 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 CNTN2Q02246 1040 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 PPIDQ08752 370 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 HIF1AQ16665 826 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 TRIM67Q6ZTA4 783 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 KIAA2013Q8IYS2 634 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 TAS1R2Q8TE23 839 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 DHX38Q92620 1227 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 PURBQ96QR8 312 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 OGTO15294 1046 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 TPD52L2O43399 206 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 CD4P01730 458 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 LRRC6Q86X45 466 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 ZFAND2BQ8WV99 257 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 L3MBTL3Q96JM7 780 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 ZFRQ96KR1 1074 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 P2RX7Q99572 595 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC28BQ9BUN5 200 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 ATP6V1G1O75348 118 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 C4orf19Q8IY42 314 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 ELMOD1Q8N336 334 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC138Q96M89 665 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 KCNK16Q96T55 309 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 DUSP9Q99956 384 aaKnown RBP13.66□□□□□ -0.22
TCOF1-213ENST00000514442 STARD13Q9Y3M8 1113 aa13.66□□□□□ -0.22
TCOF1-213ENST00000514442 SMIM31A0A1B0GVY4 71 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 C17orf102A2RUQ5 167 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 RRN3P2A6NIE6 340 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 RAP1GAPP47736 663 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 DGKZQ13574 1117 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 POTEAQ6S8J7 498 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 OTOP1Q7RTM1 612 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 MROH8Q9H579 483 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 DPP3Q9NY33 737 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 SH3BP1Q9Y3L3 701 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 MRC1P22897 1456 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 IFT172Q9UG01 1749 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 IMPDH2P12268 514 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 PIGHQ14442 188 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 STILQ15468 1287 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 RNF219Q5W0B1 726 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 ZNF572Q7Z3I7 529 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 CROCCP3Q8IVE0 287 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 CDC26Q8NHZ8 85 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 PGBD4Q96DM1 585 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 LRMDAQ9H2I8 198 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 SARS2Q9NP81 518 aaKnown RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 BLOC1S4Q9NUP1 217 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 BFARQ9NZS9 450 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 XPO1O14980 1071 aaKnown RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 APRTP07741 180 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 CYP2C8P10632 490 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 POU5F1BQ06416 359 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC15Q0P6D6 951 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 TEDDM1Q5T9Z0 273 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 EPAS1Q99814 870 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 UPF3AQ9H1J1 476 aaKnown RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 C10orf88Q9H8K7 445 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 SLC8A2Q9UPR5 921 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 NEU2Q9Y3R4 380 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 MON2Q7Z3U7 1717 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 NFAT5O94916 1531 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 GNL1P36915 607 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-213ENST00000514442 THPOP40225 353 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 OR1G1P47890 313 aa13.65□□□□□ -0.22
TCOF1-213ENST00000514442 GJA8P48165 433 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms