RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CYTH2Q99418 400 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CLPBQ9H078 707 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ARMC7Q9H6L4 198 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 EPB41L4AQ9HCS5 686 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 METTL5Q9NRN9 209 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 TSR3Q9UJK0 312 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 GIT1Q9Y2X7 761 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 DTNAQ9Y4J8 743 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 COL5A2P05997 1499 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 OAS2P29728 719 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 NPTX2P47972 431 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 MAP3K7CLP57077 242 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TEAD4Q15561 434 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TRMT11Q7Z4G4 463 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 SLFN11Q7Z7L1 901 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TMEM176AQ96HP8 235 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CPB2Q96IY4 423 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 MCEEQ96PE7 176 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ABHD10Q9NUJ1 306 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TBK1Q9UHD2 729 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ANGPTL2Q9UKU9 493 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SPATA31D1Q6ZQQ2 1576 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 NFIBO00712 420 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 LSM8O95777 96 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 STIP1P31948 543 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 HIF1AQ16665 826 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ACOT1Q86TX2 421 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 NUDCD3Q8IVD9 361 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 FAR2Q96K12 515 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 PDGFCQ9NRA1 345 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 RAB6BQ9NRW1 208 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 WWOXQ9NZC7 414 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 KIF17Q9P2E2 1029 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SPASTQ9UBP0 616 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CRYL1Q9Y2S2 319 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CNTNAP2Q9UHC6 1331 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 QRICH2Q9H0J4 1663 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 DISP2A7MBM2 1401 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 HSPA1AP0DMV8 641 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 HSPA1BP0DMV9 641 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 CDH2P19022 906 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 GJC2Q5T442 439 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 DCLRE1AQ6PJP8 1040 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 POTEAQ6S8J7 498 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 DHX40Q8IX18 779 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 FMR1NBQ8N0W7 255 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 CLMNQ96JQ2 1002 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 BTBD6Q96KE9 485 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 GBP5Q96PP8 586 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 OSGEPL1Q9H4B0 414 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 RIOX1Q9H6W3 641 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 XAB2Q9HCS7 855 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 ZDHHC4Q9NPG8 344 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 AGPAT3Q9NRZ7 376 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 C20orf96Q9NUD7 363 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 LIMA1Q9UHB6 759 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 SLIT1O75093 1534 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CCDC78A2IDD5 438 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SUPT3HB4E1H0 165 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 HNRNPRO43390 633 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 ERN1O75460 977 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 ATP5HO75947 161 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 LMNAP02545 664 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 APODP05090 189 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 HTR1BP28222 390 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CYP2C18P33260 490 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ATP5C1P36542 298 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 C2orf54Q08AI8 447 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ITGA7Q13683 1181 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 HECTD3Q5T447 861 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SPRYD7Q5W111 196 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ACAD10Q6JQN1 1059 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 BBS7Q8IWZ6 715 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 MAML1Q92585 1016 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 BRD9Q9H8M2 597 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SYTL2Q9HCH5 934 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 H2AFY2Q9P0M6 372 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 BAIAP2L1Q9UHR4 511 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CAPN11Q9UMQ6 739 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TRAF3IP3Q9Y228 551 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SETD1BQ9UPS6 1966 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 OPHN1O60890 802 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ADH1CP00326 375 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SHMT1P34896 483 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 MAPK9P45984 424 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TCEA2Q15560 299 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ZNF544Q6NX49 715 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 FBXL19Q6PCT2 694 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SARM1Q6SZW1 724 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 PLPPR4Q7Z2D5 763 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 KDELC2Q7Z4H8 507 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 ADSSL1Q8N142 457 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 CPA5Q8WXQ8 436 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 SHDQ96IW2 340 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 DNAJC1Q96KC8 554 aaKnown RBP4.41□□□□□ -1.7
VCAN-209ENST00000513016 SH2D3AQ9BRG2 576 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 NAT9Q9BTE0 207 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 C11orf49Q9H6J7 331 aa4.41□□□□□ -1.7
VCAN-209ENST00000513016 TMEM134Q9H6X4 195 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms