RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 DDX6P26196 483 aaKnown RBP eCLIP15.15■□□□□ 0.02
HOXC9-202ENST00000504557 FKBP3Q00688 224 aaKnown RBP15.15■□□□□ 0.02
HOXC9-202ENST00000504557 CCDC40Q4G0X9 1142 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 ZNF394Q53GI3 561 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 TRIM68Q6AZZ1 485 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 MON1AQ86VX9 555 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 NELFBQ8WX92 580 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 FAM3CQ92520 227 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 SEMA4DQ92854 862 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 USP13Q92995 863 aaPredicted RBP15.15■□□□□ 0.02
HOXC9-202ENST00000504557 SPATA17Q96L03 361 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 KCNK16Q96T55 309 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 BCO2Q9BYV7 579 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 NIF3L1Q9GZT8 377 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 TDP1Q9NUW8 608 aa15.15■□□□□ 0.02
HOXC9-202ENST00000504557 SPATA6Q9NWH7 488 aaPredicted RBP15.15■□□□□ 0.02
HOXC9-202ENST00000504557 THG1LQ9NWX6 298 aaKnown RBP15.15■□□□□ 0.02
HOXC9-202ENST00000504557 TRAV19A0A0A6YYK7 116 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 STX10O60499 249 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 AP1G2O75843 785 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 MRE11P49959 708 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 NUBP1P53384 320 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 UBE2HP62256 183 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 LRRC63Q05C16 580 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 FCHO2Q0JRZ9 810 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 ARHGAP29Q52LW3 1261 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 CC2D1AQ6P1N0 951 aaPredicted RBP15.14■□□□□ 0.01
HOXC9-202ENST00000504557 C12orf29Q8N999 325 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 SLC2A14Q8TDB8 520 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 MYRFLQ96LU7 910 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 TWNKQ96RR1 684 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 DDX23Q9BUQ8 820 aaKnown RBP15.14■□□□□ 0.01
HOXC9-202ENST00000504557 GKN1Q9NS71 199 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 TRPM5Q9NZQ8 1165 aa15.14■□□□□ 0.01
HOXC9-202ENST00000504557 MRPS17Q9Y2R5 130 aaKnown RBP15.14■□□□□ 0.01
HOXC9-202ENST00000504557 SLC16A3O15427 465 aaKnown RBP15.13■□□□□ 0.01
HOXC9-202ENST00000504557 USP17L7P0C7H9 530 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 HDCP19113 662 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 TRIM21P19474 475 aaKnown RBP15.13■□□□□ 0.01
HOXC9-202ENST00000504557 BMP6P22004 513 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 MAP3K7CLP57077 242 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 LRMPQ12912 555 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 TAF10Q12962 218 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 MORC3Q14149 939 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 CBWD6Q4V339 395 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 COBLL1Q53SF7 1204 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 WDR44Q5JSH3 913 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 CBWD3Q5JTY5 395 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 CBWD5Q5RIA9 395 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 PAQR9Q6ZVX9 377 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 CREBRFQ8IUR6 639 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 FUKQ8N0W3 1084 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 FBXL13Q8NEE6 735 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 RIN3Q8TB24 985 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 TATDN2Q93075 761 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 FBXO32Q969P5 355 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 SMARCD1Q96GM5 515 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 DHTKD1Q96HY7 919 aaPredicted RBP15.13■□□□□ 0.01
HOXC9-202ENST00000504557 C8orf48Q96LL4 319 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 ARID3AQ99856 593 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 GTPBP4Q9BZE4 634 aaKnown RBP15.13■□□□□ 0.01
HOXC9-202ENST00000504557 EBF3Q9H4W6 596 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 RAB20Q9NX57 234 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 OBP2AQ9NY56 170 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 DLGAP2Q9P1A6 1054 aa15.13■□□□□ 0.01
HOXC9-202ENST00000504557 ARMCX3Q9UH62 379 aaPredicted RBP15.13■□□□□ 0.01
HOXC9-202ENST00000504557 PPP1R3GB7ZBB8 358 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 ARNTLO00327 626 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 MAN2B1O00754 1011 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 SCAMP3O14828 347 aaKnown RBP15.12■□□□□ 0.01
HOXC9-202ENST00000504557 NCAM2O15394 837 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 BEST1O76090 585 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 ARSAP15289 507 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 YWHAQP27348 245 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 GTF2H1P32780 548 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 FRMD5Q7Z6J6 570 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 C1orf210Q8IVY1 113 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 NUP93Q8N1F7 819 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 SCAMP5Q8TAC9 235 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 SLITRK1Q96PX8 696 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 DUSP9Q99956 384 aaKnown RBP15.12■□□□□ 0.01
HOXC9-202ENST00000504557 NT5C1AQ9BXI3 368 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 IRF2BPLQ9H1B7 796 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 DMAP1Q9NPF5 467 aaPredicted RBP15.12■□□□□ 0.01
HOXC9-202ENST00000504557 SMPD4Q9NXE4 827 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 EHD2Q9NZN4 543 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 ZMYM5Q9UJ78 669 aa15.12■□□□□ 0.01
HOXC9-202ENST00000504557 SHISA7A6NL88 538 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 SPECC1L-ADORA2AF8WAN1 911 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 SLC5A3P53794 718 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 PLCB2Q00722 1185 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 MTF1Q14872 753 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 PON2Q15165 354 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 ITPRIPL2Q3MIP1 535 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 TXNDC11Q6PKC3 985 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 UNC93AQ86WB7 457 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 ELOA2Q8IYF1 753 aaPredicted RBP15.11■□□□□ 0.01
HOXC9-202ENST00000504557 SH3RF2Q8TEC5 729 aa15.11■□□□□ 0.01
HOXC9-202ENST00000504557 HEXIM2Q96MH2 286 aaKnown RBP15.11■□□□□ 0.01
HOXC9-202ENST00000504557 NELL2Q99435 816 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms