RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 CD19P15391 556 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 GRIK1P39086 918 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 PBX1P40424 430 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 EPHA5P54756 1037 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 POLR2FP61218 127 aaKnown RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 CBX2Q14781 532 aaPredicted RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 VEPH1Q14D04 833 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 STILQ15468 1287 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 SMAD2Q15796 467 aaKnown RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 CNGA2Q16280 664 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 PTCRAQ6ISU1 281 aaPredicted RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 DNAJB7Q7Z6W7 309 aaPredicted RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 SCN4BQ8IWT1 228 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 FAM71AQ8IYT1 594 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 LEMD2Q8NC56 503 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 PSMG2Q969U7 264 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 GPR88Q9GZN0 384 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 RBSNQ9H1K0 784 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 WDR6Q9NNW5 1121 aaKnown RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 KRT82Q9NSB4 513 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 TMEM30AQ9NV96 361 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 IFNKQ9P0W0 207 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 DNMT3BQ9UBC3 853 aaKnown RBP12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 CDH22Q9UJ99 828 aa12.62□□□□□ -0.39
PDLIM5-208ENST00000504489 F8VP50 259 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 EPHB6O15197 1021 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 CBFA2T2O43439 604 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 AP1G2O75843 785 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 FAM200BP0CF97 657 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 CSH1P0DML2 217 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 CSH2P0DML3 217 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 ANXA13P27216 316 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 ADORA2BP29275 332 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 GPR15P49685 360 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 CACNA2D1P54289 1103 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 JAM2P57087 298 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 RAPGEF1Q13905 1077 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 DDR2Q16832 855 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 SARM1Q6SZW1 724 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 LCLAT1Q6UWP7 414 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 GRASPQ7Z6J2 395 aaPredicted RBP12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 ANKRD52Q8NB46 1076 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 GIPC2Q8TF65 315 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 TFAP2BQ92481 460 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 ASB2Q96Q27 587 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 SMOQ99835 787 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 LRRC3Q9BY71 257 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 DUSP16Q9BY84 665 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 POMKQ9H5K3 350 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 DMAP1Q9NPF5 467 aaPredicted RBP12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 HCFC1R1Q9NWW0 138 aa12.61□□□□□ -0.39
PDLIM5-208ENST00000504489 UNC80Q8N2C7 3258 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 SLC38A8A6NNN8 435 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 F8VZ95 297 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 O00370 1275 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 ZNF197O14709 1029 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 CYP26A1O43174 497 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 BEST1O76090 585 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 TPM3P06753 285 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 RHOP08100 348 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 HMGA1P17096 107 aaKnown RBP12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 NPR3P17342 541 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 CLCN1P35523 988 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 USP8P40818 1118 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 KCNQ1P51787 676 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 BPIFB4P59827 614 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 PTK2Q05397 1052 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 MMRN1Q13201 1228 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 TAF12Q16514 161 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 PABPC1LQ4VXU2 614 aaKnown RBP12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 FIGNQ5HY92 759 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 SDHAF4Q5VUM1 108 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 CLEC20AQ6ZU45 233 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 TMC8Q8IU68 726 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 ZMIZ2Q8NF64 920 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 ZNF606Q8WXB4 792 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 TRMT2BQ96GJ1 504 aaKnown RBP12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 MYRFLQ96LU7 910 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 KCNK16Q96T55 309 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 ZSWIM1Q9BR11 485 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 CORO1BQ9BR76 489 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 EDEM3Q9BZQ6 932 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 UBXN6Q9BZV1 441 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 XPO4Q9C0E2 1151 aaKnown RBP12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 PNPLA8Q9NP80 782 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 NLRC4Q9NPP4 1024 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 ASAH2Q9NR71 780 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 COMMD8Q9NX08 183 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 EHD2Q9NZN4 543 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 TSPAN16Q9UKR8 245 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 MYO6Q9UM54 1294 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 LHX6Q9UPM6 363 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 CLUHO75153 1309 aa12.6□□□□□ -0.39
PDLIM5-208ENST00000504489 TNFRSF10BO14763 440 aa12.59□□□□□ -0.39
PDLIM5-208ENST00000504489 MED7O43513 233 aa12.59□□□□□ -0.39
PDLIM5-208ENST00000504489 MICAL2O94851 1124 aa12.59□□□□□ -0.39
PDLIM5-208ENST00000504489 FGF19O95750 216 aa12.59□□□□□ -0.39
PDLIM5-208ENST00000504489 PNMA6AP0CW24 399 aaPredicted RBP12.59□□□□□ -0.39
PDLIM5-208ENST00000504489 BMP1P13497 986 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms