RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DHRS4Q9BTZ2 278 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 USH1CQ9Y6N9 552 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUA9 196 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TCRBV7S3A2A0A539 114 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SOWAHBA6NEL2 793 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 E7ESA3 106 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 NDC80O14777 642 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PRKCBP05771 671 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CD48P09326 243 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KRT3P12035 628 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KDELR1P24390 212 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EDNRBP24530 442 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TCF7P36402 384 aaPredicted RBP16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 GEMIN4P57678 1058 aaKnown RBP16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TFAMQ00059 246 aaKnown RBP16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LAMTOR4Q0VGL1 99 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 IER5Q5VY09 327 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MZB1Q8WU39 189 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 C10orf82Q8WW14 230 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FAM210AQ96ND0 272 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PHACTR1Q9C0D0 580 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LHX5Q9H2C1 402 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CYLDQ9NQC7 956 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FETUBQ9UGM5 382 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 STRIP2Q9ULQ0 834 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ANP32DO95626 131 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PROZP22891 400 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 VEGFBP49765 207 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 YWHAEP62258 255 aaKnown RBP16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SURF1Q15526 300 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 WDR78Q5VTH9 848 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FAM160B1Q5W0V3 765 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LRRC8CQ8TDW0 803 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 N4BP2L2Q92802 583 aaPredicted RBP16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ERP27Q96DN0 273 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ETNK1Q9HBU6 452 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PTPRHQ9HD43 1115 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SSU72Q9NP77 194 aaKnown RBP16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CREBZFQ9NS37 354 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CPA4Q9UI42 421 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZBTB42B2RXF5 422 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PIAS1O75925 651 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KRT4P19013 534 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CCND1P24385 295 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RAP1GAPP47736 663 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LVRNQ6Q4G3 990 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ADGRD1Q6QNK2 874 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 UNC45BQ8IWX7 931 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TMEM130Q8N3G9 435 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZNF276Q8N554 614 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EMC1Q8N766 993 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RNF149Q8NC42 400 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FBF1Q8TES7 1133 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FNIP1Q8TF40 1166 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PYROXD1Q8WU10 500 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SEPT1Q8WYJ6 367 aa16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZNF75CPQ92670 426 aaPredicted RBP16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FRMD8P1Q9BZ68 369 aaPredicted RBP16.85■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 A0A0G2JMZ2 1700 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LRRC37A2A6NM11 1700 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TMEM63AO94886 807 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KRT7P08729 469 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 T-ENOLP0DO92 83 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ARL4CP56559 192 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MYO1EQ12965 1108 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZC3H12AQ5D1E8 599 aaKnown RBP16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 OTOAQ7RTW8 1153 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 XYLT1Q86Y38 959 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LRRC71Q8N4P6 559 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TTC13Q8NBP0 860 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CPXM1Q96SM3 734 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SDCBP2Q9H190 292 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LRMDAQ9H2I8 198 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ACSS3Q9H6R3 686 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TXLNGQ9NUQ3 528 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 C15orf41Q9Y2V0 281 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 IGKV6-21A0A0C4DH24 114 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 B4GALT4O60513 344 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 NEBLO76041 1014 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CD19P15391 556 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 POLR2BP30876 1174 aaKnown RBP16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RAD23BP54727 409 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 INHBEP58166 350 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PSMC1P62191 440 aaKnown RBP16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LACTBP83111 547 aaPredicted RBP16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TAF5Q15542 800 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MAPK6Q16659 721 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 HHATQ5VTY9 493 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RHPN2Q8IUC4 686 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 THNSL1Q8IYQ7 743 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ATP11CQ8NB49 1132 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FBXO36Q8NEA4 188 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 DCAKDQ8WVC6 231 aa16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 NXF1Q9UBU9 619 aaKnown RBP16.84■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZSWIM8A7E2V4 1837 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ERBB2P04626 1255 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MARK3P27448 753 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CDH8P55286 799 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 OSTNP61366 133 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SETDB1Q15047 1291 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms