RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 STX1BP61266 288 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 KRR1Q13601 381 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 LVRNQ6Q4G3 990 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 HS2ST1Q7LGA3 356 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 UBR7Q8N806 425 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 SLC22A8Q8TCC7 542 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 DNAJB3Q8WWF6 145 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 CEP19Q96LK0 163 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 C12orf4Q9NQ89 552 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 MAN1C1Q9NR34 630 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 DUSP12Q9UNI6 340 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 PCDHB15Q9Y5E8 787 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 CYP46A1Q9Y6A2 500 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 SGSM2O43147 1006 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CBFA2T3O75081 653 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PRB1P04280 392 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 HSMCR30P0CW71 290 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ADSSP30520 456 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 FNTAP49354 379 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 YARSP54577 528 aaKnown RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 MTTPP55157 894 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MTX1Q13505 466 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 UGP2Q16851 508 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PACS2Q86VP3 889 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 RHOBTB2Q9BYZ6 727 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ZCWPW1Q9H0M4 648 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MUC3BQ9H195 1237 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TRPV5Q9NQA5 729 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 THSD1Q9NS62 852 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TYW1Q9NV66 732 aaKnown RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 PIN4Q9Y237 131 aaKnown RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 PCDHGA5Q9Y5G8 931 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PKD1L3Q7Z443 1732 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 DDX39AO00148 427 aaKnown RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 HIP1O00291 1037 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 AGR2O95994 175 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 KRT15P19012 456 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PPP2R1AP30153 589 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ETV5P41161 510 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CSRP3P50461 194 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TMPRSS3P57727 454 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 GPC5P78333 572 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ZBED6P86452 979 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 RPL6Q02878 288 aaKnown RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 DNAJC3Q13217 504 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MYBPC3Q14896 1274 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 SNX17Q15036 470 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 BBS9Q3SYG4 887 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.35□□□□□ -1.55
USP54-216ENST00000498143 ARMC6Q6NXE6 501 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CRTC1Q6UUV9 634 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 AGMOQ6ZNB7 445 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 LRRC8AQ8IWT6 810 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 KIAA1958Q8N8K9 716 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 OSCP1Q8WVF1 389 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 SCFD1Q8WVM8 642 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ANKS1AQ92625 1134 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 INPP5DQ92835 1189 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CNPY3Q9BT09 278 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 IER2Q9BTL4 223 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 SMARCAD1Q9H4L7 1026 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CYP4F11Q9HBI6 524 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MKS1Q9NXB0 559 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 RRN3Q9NYV6 651 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 SENP1Q9P0U3 644 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 SLC6A14Q9UN76 642 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PCDHB3Q9Y5E6 796 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CDY2AQ9Y6F7 541 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 STON1Q9Y6Q2 735 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TRANK1O15050 2925 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PDE5AO76074 875 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MBD4O95243 580 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 APBB3O95704 486 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MMP1P03956 469 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 C8BP07358 591 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ALPPL2P10696 532 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CREB1P16220 341 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 HSD3B2P26439 372 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CST5P28325 142 aaPredicted RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 SMARCA1P28370 1054 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 SCNN1AP37088 669 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 GLUD2P49448 558 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 POLGP54098 1239 aaPredicted RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 NSUN2Q08J23 767 aaKnown RBP eCLIP5.35□□□□□ -1.55
USP54-216ENST00000498143 TROAPQ12815 778 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CCDC142Q17RM4 750 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TMTC4Q5T4D3 741 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 FBXO33Q7Z6M2 555 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ADCK1Q86TW2 530 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TP53INP2Q8IXH6 220 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 LSMEM2Q8N112 164 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 SMRP1Q8NCR6 262 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 HMGB4Q8WW32 186 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 TOP1MTQ969P6 601 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CEP295NLQ96MC4 621 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 JAKMIP1Q96N16 626 aaKnown RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 HERC2P3Q9BVR0 1158 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 CCDC90BQ9GZT6 254 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms