RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 C8orf48Q96LL4 319 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 ZNF512Q96ME7 567 aaPredicted RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 DUSP16Q9BY84 665 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 PRKD2Q9BZL6 878 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 UBE2ZQ9H832 354 aaPredicted RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 SEPT11Q9NVA2 429 aaKnown RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 HCFC1R1Q9NWW0 138 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 MAGED2Q9UNF1 606 aaPredicted RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 SLC38A8A6NNN8 435 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 MFAP3LO75121 409 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 XYLBO75191 536 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 CCDC172P0C7W6 258 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 HOXB8P17481 243 aaPredicted RBP12.58□□□□□ -0.4
CUX1-210ENST00000497815 RGS7P49802 495 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 MRE11P49959 708 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 NTHL1P78549 312 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 BST2Q10589 180 aaKnown RBP12.58□□□□□ -0.4
CUX1-210ENST00000497815 TBX2Q13207 712 aaPredicted RBP12.58□□□□□ -0.4
CUX1-210ENST00000497815 SMYD5Q6GMV2 418 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 GPRIN1Q7Z2K8 1008 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 IRF2BP2Q7Z5L9 587 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 GRASPQ7Z6J2 395 aaPredicted RBP12.58□□□□□ -0.4
CUX1-210ENST00000497815 HLA-CQ95604 372 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 CORO1BQ9BR76 489 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 NUCKS1Q9H1E3 243 aaKnown RBP12.58□□□□□ -0.4
CUX1-210ENST00000497815 CSNK1G1Q9HCP0 422 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 PRDM6Q9NQX0 595 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 AIPL1Q9NZN9 384 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 CD207Q9UJ71 328 aa12.58□□□□□ -0.4
CUX1-210ENST00000497815 NOCTQ9UK39 431 aaKnown RBP12.58□□□□□ -0.4
CUX1-210ENST00000497815 MYO7AQ13402 2215 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 AKR1B15C9JRZ8 316 aaPredicted RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 PIK3R2O00459 728 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 SETSIPP0DME0 302 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 MYL4P12829 197 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 PTPN2P17706 415 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 CHRNB2P17787 502 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 CDC25BP30305 580 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 HOXA9P31269 272 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 CDR2Q01850 454 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 KLHL30Q0D2K2 578 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 PKDCCQ504Y2 493 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 TDRD12Q587J7 1177 aaKnown RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 CES5AQ6NT32 575 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 DENND5BQ6ZUT9 1274 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 RTL10Q7L3V2 364 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 DNAJB7Q7Z6W7 309 aaPredicted RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 GPR149Q86SP6 731 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 ITIH5Q86UX2 942 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 PIGZQ86VD9 579 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 FMNL3Q8IVF7 1028 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 HS6ST3Q8IZP7 471 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 C1orf131Q8NDD1 294 aaKnown RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 CMASQ8NFW8 434 aaPredicted RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 OR8K1Q8NGG5 319 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 DDX1Q92499 740 aaKnown RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 MSLNLQ96KJ4 702 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 AGPAT1Q99943 283 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 S1PR5Q9H228 398 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 ADAM7Q9H2U9 754 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 HAUS4Q9H6D7 363 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 ZNF334Q9HCZ1 680 aaPredicted RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 ST7Q9NRC1 585 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 DNMT3BQ9UBC3 853 aaKnown RBP12.57□□□□□ -0.4
CUX1-210ENST00000497815 PCDHGC3Q9UN70 934 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 CEP83Q9Y592 693 aa12.57□□□□□ -0.4
CUX1-210ENST00000497815 HHLA1C9JL84 531 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 XPO1O14980 1071 aaKnown RBP12.56□□□□□ -0.4
CUX1-210ENST00000497815 CSH1P0DML2 217 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 CSH2P0DML3 217 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 LCP1P13796 627 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 GPD2P43304 727 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 SLC5A3P53794 718 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 USP46P62068 366 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 FMO1Q01740 532 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 TFF2Q03403 129 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 ITIH3Q06033 890 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 TSR1Q2NL82 804 aaKnown RBP12.56□□□□□ -0.4
CUX1-210ENST00000497815 PMF1Q6P1K2 205 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 ZNF677Q86XU0 584 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 CNGA4Q8IV77 575 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 NUP93Q8N1F7 819 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 SCAMP5Q8TAC9 235 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 SYN2Q92777 582 aaPredicted RBP12.56□□□□□ -0.4
CUX1-210ENST00000497815 PSMG2Q969U7 264 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 SPATA17Q96L03 361 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 DNAJC7Q99615 494 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 ASAH2Q9NR71 780 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 ABHD10Q9NUJ1 306 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 ZNHIT6Q9NWK9 470 aaKnown RBP12.56□□□□□ -0.4
CUX1-210ENST00000497815 CYTH4Q9UIA0 394 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 ASB3Q9Y575 518 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 MYO9BQ13459 2157 aa12.56□□□□□ -0.4
CUX1-210ENST00000497815 TNFRSF10BO14763 440 aa12.55□□□□□ -0.4
CUX1-210ENST00000497815 SERPING1P05155 500 aa12.55□□□□□ -0.4
CUX1-210ENST00000497815 RHOP08100 348 aa12.55□□□□□ -0.4
CUX1-210ENST00000497815 PLEKP08567 350 aaPredicted RBP12.55□□□□□ -0.4
CUX1-210ENST00000497815 HMGA1P17096 107 aaKnown RBP12.55□□□□□ -0.4
CUX1-210ENST00000497815 GJA1P17302 382 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms