RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	CNTNAP5	Q8WYK1	1306 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	NBEA	Q8NFP9	2946 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	DMXL2	Q8TDJ6	3036 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	TRIP12	Q14669	1992 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CELSR3	Q9NYQ7	3312 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ABHD14A-ACY1	A0A1B0GW23	586 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	FAM90A27P	A6NNH2	459 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	C22orf46	C9J442	243 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	DHX15	O43143	795 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	RANBP6	O60518	1105 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	LMNA	P02545	664 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	C4BPA	P04003	597 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	CYP17A1	P05093	508 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SLC3A2	P08195	630 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	MMP3	P08254	477 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	ADRB1	P08588	477 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	TOP1	P11387	765 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SDHA	P31040	664 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	HOXC8	P31273	242 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	EPHA5	P54756	1037 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	GHRHR	Q02643	423 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	KCNMA1	Q12791	1236 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	RAPGEF1	Q13905	1077 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	KRT72	Q14CN4	511 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	ANGPT1	Q15389	498 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	ALX1	Q15699	326 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SLC35G1	Q2M3R5	365 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	TRIM71	Q2Q1W2	868 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	PITRM1	Q5JRX3	1037 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	ZFYVE27	Q5T4F4	411 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	LRRC8D	Q7L1W4	858 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SRL	Q86TD4	932 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	RBM12B	Q8IXT5	1001 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	GRAMD1C	Q8IYS0	662 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	KIAA0319L	Q8IZA0	1049 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	NAT16	Q8N8M0	369 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	DNER	Q8NFT8	737 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	MYRIP	Q8NFW9	859 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	KCNG4	Q8TDN1	519 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SCFD2	Q8WU76	684 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SUSD6	Q92537	303 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	TRMT2B	Q96GJ1	504 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	FCRL2	Q96LA5	508 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	JMJD8	Q96S16	334 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	WDR11	Q9BZH6	1224 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	CSRNP2	Q9H175	543 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	IL25	Q9H293	177 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	TMEM60	Q9H2L4	133 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	BHMT2	Q9H2M3	363 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	CPVL	Q9H3G5	476 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	RC3H2	Q9HBD1	1191 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	SLC6A20	Q9NP91	592 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	NLRC4	Q9NPP4	1024 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	CASS4	Q9NQ75	786 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	KCNH7	Q9NS40	1196 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	TCP11L1	Q9NUJ3	509 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	ADD3	Q9UEY8	706 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	DSE	Q9UL01	958 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	TMPRSS11E	Q9UL52	423 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	EDAR	Q9UNE0	448 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	CTDP1	Q9Y5B0	961 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	FRMPD4	Q14CM0	1322 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	RAD50	Q92878	1312 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	FREM2	Q5SZK8	3169 aa		4.86	□□□□□ -1.63
VPS52-222	ENST00000495981	MYO18B	Q8IUG5	2567 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	FADS2P1	A8MWK0	482 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981		H3BML4	177 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	HAS3	O00219	553 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	PIK3R2	O00459	728 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	TBX3	O15119	743 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	HIP1R	O75146	1068 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	F13B	P05160	661 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	ZNF286B	P0CG31	522 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	HSPD1	P10809	573 aa	Known RBP	4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	TYRP1	P17643	537 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	PDC	P20941	246 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	TGM1	P22735	817 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CALML3	P27482	149 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	FNTB	P49356	437 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	PDE1A	P54750	535 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	AK2	P54819	239 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	HAND2	P61296	217 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	COASY	Q13057	564 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	SEMA5A	Q13591	1074 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CDC37	Q16543	378 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	LONRF1	Q17RB8	773 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	TUBB8	Q3ZCM7	444 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CYP27C1	Q4G0S4	372 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	MCTP2	Q6DN12	878 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	RNF207	Q6ZRF8	634 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	USP45	Q70EL2	814 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	SLCO6A1	Q86UG4	719 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	ZZZ3	Q8IYH5	903 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	SUMF1	Q8NBK3	374 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	IL31RA	Q8NI17	732 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CYP2W1	Q8TAV3	490 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CAGE1	Q8TC20	777 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	AFAP1L1	Q8TED9	768 aa		4.85	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms