RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 KLC3Q6P597 504 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PRPF39Q86UA1 669 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 CERS5Q8N5B7 392 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 FBXO27Q8NI29 283 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ARHGEF1Q92888 912 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TEKT1Q969V4 418 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 NLRP4Q96MN2 994 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 SRPK1Q96SB4 655 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 KLF6Q99612 283 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 LBHD1Q9BQE6 289 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ADAM33Q9BZ11 813 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 IQCGQ9H095 443 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 DEFB129Q9H1M3 183 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 C12orf65Q9H3J6 166 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PREBQ9HCU5 417 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PLLPQ9Y342 182 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 MRPL11Q9Y3B7 192 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TCRBV9S1A1TA0A576 114 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 TCRBV5S1A1TA0A578 114 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 GOLGA8SH3BPF8 625 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 GOLGA8MH3BSY2 632 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 BIRC5O15392 142 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 COQ9O75208 318 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 SNNO75324 88 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-230ENST00000495090 IFNB1P01574 187 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 CALB1P05937 261 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 FAM200BP0CF97 657 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 MMP8P22894 467 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 STAT2P52630 851 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 BST1Q10588 318 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 NFIAQ12857 509 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 ATP13A4Q4VNC1 1196 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 SFT2D3Q587I9 215 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 ANGEL2Q5VTE6 544 aaKnown RBP10.1□□□□□ -0.79
SYNE1-230ENST00000495090 WDR78Q5VTH9 848 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 UGT2A3Q6UWM9 527 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 RFX8Q6ZV50 586 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 SMIM5Q71RC9 77 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 ARCQ7LC44 396 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 SLC26A11Q86WA9 606 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 CRLF3Q8IUI8 442 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 C4orf19Q8IY42 314 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 GPD1LQ8N335 351 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 MARVELD2Q8N4S9 558 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 SPIRE2Q8WWL2 714 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 E2F7Q96AV8 911 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 PRICKLE1Q96MT3 831 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-230ENST00000495090 PLEKHG4BQ96PX9 1271 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 NTPCRQ9BSD7 190 aaKnown RBP10.1□□□□□ -0.79
SYNE1-230ENST00000495090 TIMMDC1Q9NPL8 285 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 KLHL11Q9NVR0 708 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 HBS1LQ9Y450 684 aaKnown RBP10.1□□□□□ -0.79
SYNE1-230ENST00000495090 IVNS1ABPQ9Y6Y0 642 aa10.1□□□□□ -0.79
SYNE1-230ENST00000495090 A6NJR5 290 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SDR42E2A6NKP2 422 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TTC36A6NLP5 189 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 DENRO43583 198 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ZNF862O60290 1169 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 KRT37O76014 449 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 USP1O94782 785 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM63AO94886 807 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 KLHL2O95198 593 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 CALCAP01258 141 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SMIM18P0DKX4 95 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TAL1P17542 331 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 GNA15P30679 374 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 YWHABP31946 246 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 RPL22P35268 128 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 RPL5P46777 297 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TMPRSS15P98073 1019 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PLCB3Q01970 1234 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 KDSRQ06136 332 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SULT2A1Q06520 285 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ZNF252P-AS1Q0IIN9 211 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 FAAP100Q0VG06 881 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PDK3Q15120 406 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TAZQ16635 292 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ABCB5Q2M3G0 1257 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ZACNQ401N2 412 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 C2CD6Q53TS8 623 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 BRDTQ58F21 947 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 LGSNQ5TDP6 509 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PGM2L1Q6PCE3 622 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 B3GNT6Q6ZMB0 384 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 BBS12Q6ZW61 710 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ARID3BQ8IVW6 561 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 CLPTM1LQ96KA5 538 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ZFRQ96KR1 1074 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ZDHHC15Q96MV8 337 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PI4K2AQ9BTU6 479 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 MRIQ9BWK5 157 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 IDI2Q9BXS1 227 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 FRMD8Q9BZ67 464 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 GINM1Q9NU53 330 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ITGA11Q9UKX5 1188 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ASTN2O75129 1339 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 C3orf70A6NLC5 250 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TTLL13PA6NNM8 815 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PRR5-ARHGAP8B1AHC4 643 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 DHX15O43143 795 aaKnown RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms