RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CKAP2Q8WWK9 683 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 MROH8Q9H579 483 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 TAS2R14Q9NYV8 317 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 E7ENQ6 273 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 ZC3H11AO75152 810 aaKnown RBP eCLIP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 STAG3L1P0CL83 205 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 MAPTP10636 758 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 STX3Q13277 289 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 GOLGA7BQ2TAP0 167 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 AADACL2Q6P093 401 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 ACOT1Q86TX2 421 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 SPIRE2Q8WWL2 714 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 THAP11Q96EK4 314 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 UPF3AQ9H1J1 476 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 ADA2Q9NZK5 511 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 JADE1Q6IE81 842 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 NOP9Q86U38 636 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 SKA2Q8WVK7 121 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 DPP3Q9NY33 737 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 BFARQ9NZS9 450 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 CCDC78A2IDD5 438 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 H3BRB1 525 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 TGFB1I1O43294 461 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 SH3BP5O60239 455 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 MYL2P10916 166 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 MAP4K3Q8IVH8 894 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 SCUBE1Q8IWY4 988 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 ZMAT2Q96NC0 199 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 TUT1Q9H6E5 874 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 ATP9BO43861 1147 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 FECHP22830 423 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 SULT1E1P49888 294 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 STILQ15468 1287 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 DCAF6Q58WW2 860 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 FAM71DQ8N9W8 422 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 VPS33BQ9H267 617 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 UBIAD1Q9Y5Z9 338 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 PYGMP11217 842 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 MMP13P45452 471 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 KDELC2Q7Z4H8 507 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 LCA5Q86VQ0 697 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 FSD1LQ9BXM9 530 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 NEUROG2Q9H2A3 272 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 FAM96AQ9H5X1 160 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 VAV3Q9UKW4 847 aa16.96■□□□□ 0.31
CCDC88B-209ENST00000494080 TGFB3P10600 412 aa16.96■□□□□ 0.3
CCDC88B-209ENST00000494080 MTFR1Q15390 333 aa16.96■□□□□ 0.3
CCDC88B-209ENST00000494080 NOTUMQ6P988 496 aa16.96■□□□□ 0.3
CCDC88B-209ENST00000494080 MYLK4Q86YV6 388 aaPredicted RBP16.96■□□□□ 0.3
CCDC88B-209ENST00000494080 ZNF606Q8WXB4 792 aa16.96■□□□□ 0.3
CCDC88B-209ENST00000494080 XPO7Q9UIA9 1087 aaKnown RBP16.96■□□□□ 0.3
CCDC88B-209ENST00000494080 IRF6O14896 467 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 RARAP10276 462 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GPD1P21695 349 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GEMIN4P57678 1058 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 ARHGEF6Q15052 776 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 CCDC92Q53HC0 331 aaPredicted RBP16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 FAXCQ5TGI0 409 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 EXOC3L1Q86VI1 746 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 SLC25A41Q8N5S1 370 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GANQ9H2C0 597 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 ZBBXA8MT70 800 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 NUDT17P0C025 328 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 ATP6V1C1P21283 382 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 OAZ1P54368 228 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 SLC35G1Q2M3R5 365 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GPC2Q8N158 579 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 KRT35Q92764 455 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GFM2Q969S9 779 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GOLGA8QA0A0J9YX86 632 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 RNF103-CHMP3A0A140T963 221 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GOLGA8OA6NCC3 632 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GOLGA8NF8WBI6 632 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 ADRB2P07550 413 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 GNL1P36915 607 aaPredicted RBP16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 UGCGQ16739 394 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 MOB2Q70IA6 237 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 CCDC33Q8N5R6 958 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 EXT2Q93063 718 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 PPCSQ9HAB8 311 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 PPP2R3BQ9Y5P8 575 aa16.95■□□□□ 0.3
CCDC88B-209ENST00000494080 TBC1D12O60347 775 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 GJB6O95452 261 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 UBA1P22314 1058 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 GSTT1P30711 240 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ZNF200P98182 395 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CDC42EP1Q00587 391 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 TMEM132BQ14DG7 1078 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CLEC16AQ2KHT3 1053 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 SPDYCQ5MJ68 293 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PGBD4Q96DM1 585 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 WARS2Q9UGM6 360 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 COL1A1P02452 1464 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 NID2Q14112 1375 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 TYW5A2RUC4 315 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CDH8P55286 799 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PPATQ06203 517 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 BTBD8Q5XKL5 378 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 TRPM4Q8TD43 1214 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms