RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 SQORQ9Y6N5 450 aa5.33□□□□□ -1.56
SMC4-223ENST00000493695 PDE6CP51160 858 aa5.32□□□□□ -1.56
SMC4-223ENST00000493695 MAP2K6P52564 334 aa5.32□□□□□ -1.56
SMC4-223ENST00000493695 LINC00205P59089 165 aa5.32□□□□□ -1.56
SMC4-223ENST00000493695 E2F1Q01094 437 aa5.32□□□□□ -1.56
SMC4-223ENST00000493695 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.32□□□□□ -1.56
SMC4-223ENST00000493695 SPC25Q9HBM1 224 aa5.32□□□□□ -1.56
SMC4-223ENST00000493695 PLEKHM1Q9Y4G2 1056 aa5.32□□□□□ -1.56
SMC4-223ENST00000493695 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.32□□□□□ -1.56
SMC4-223ENST00000493695 FZD9O00144 591 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 VNN1O95497 513 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 PRKCBP05771 671 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 PRF1P14222 555 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 PRKAG1P54619 331 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 KRTAP10-6P60371 365 aaPredicted RBP5.31□□□□□ -1.56
SMC4-223ENST00000493695 KRT85P78386 507 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 OSR1Q8TAX0 266 aaPredicted RBP5.31□□□□□ -1.56
SMC4-223ENST00000493695 SLC35A4Q96G79 324 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 FAM167AQ96KS9 214 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 FYTTD1Q96QD9 318 aaKnown RBP5.31□□□□□ -1.56
SMC4-223ENST00000493695 MMS19Q96T76 1030 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 KRTAP2-2Q9BYT5 123 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 TRMT13Q9NUP7 481 aaKnown RBP5.31□□□□□ -1.56
SMC4-223ENST00000493695 POT1Q9NUX5 634 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 XPR1Q9UBH6 696 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 CPA4Q9UI42 421 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 TMX2Q9Y320 296 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 LRP12Q9Y561 859 aa5.31□□□□□ -1.56
SMC4-223ENST00000493695 PSMD9O00233 223 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 CES2O00748 559 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 SNUPNO95149 360 aaKnown RBP5.3□□□□□ -1.56
SMC4-223ENST00000493695 IL33O95760 270 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 PLS1Q14651 629 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 LY6KQ17RY6 165 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 TRIM71Q2Q1W2 868 aaKnown RBP5.3□□□□□ -1.56
SMC4-223ENST00000493695 MTHFD1LQ6UB35 978 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 ZNF813Q6ZN06 617 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 USP45Q70EL2 814 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 ZNF280BQ86YH2 543 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 SIRT6Q8N6T7 355 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 ADAMTS18Q8TE60 1221 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 SOCS4Q8WXH5 440 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 CNNM1Q9NRU3 951 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 TTC3P53804 2025 aa5.3□□□□□ -1.56
SMC4-223ENST00000493695 FAM90A10PA6NDY2 464 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 CD8B2A6NJW9 211 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 ABLIM3O94929 683 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 CDK11BP21127 795 aaKnown RBP5.29□□□□□ -1.56
SMC4-223ENST00000493695 HOXD9P28356 352 aaPredicted RBP5.29□□□□□ -1.56
SMC4-223ENST00000493695 LRPAP1P30533 357 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 MYO1EQ12965 1108 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 MLC1Q15049 377 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 PGS1Q32NB8 556 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 RNASE12Q5GAN4 147 aaKnown RBP5.29□□□□□ -1.56
SMC4-223ENST00000493695 CATIPQ7Z7H3 387 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 SPATA3Q8NHX4 192 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 MTFMTQ96DP5 389 aaKnown RBP5.29□□□□□ -1.56
SMC4-223ENST00000493695 CXorf36Q9H7Y0 433 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 ARMT1Q9H993 441 aa5.29□□□□□ -1.56
SMC4-223ENST00000493695 TNKSO95271 1327 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 ZRANB2O95218 330 aaKnown RBP eCLIP5.28□□□□□ -1.56
SMC4-223ENST00000493695 CRYABP02511 175 aaKnown RBP5.28□□□□□ -1.56
SMC4-223ENST00000493695 ALPLP05186 524 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 VIPR2P41587 438 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 COPB1P53618 953 aaKnown RBP5.28□□□□□ -1.56
SMC4-223ENST00000493695 UCP3P55916 312 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 SUMO2P61956 95 aaKnown RBP5.28□□□□□ -1.56
SMC4-223ENST00000493695 MGAT5BQ3V5L5 792 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 C10orf25Q5T742 122 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 C16orf71Q8IYS4 520 aaPredicted RBP5.28□□□□□ -1.56
SMC4-223ENST00000493695 IZUMO1Q8IYV9 350 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 SMRP1Q8NCR6 262 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 TMEM171Q8WVE6 324 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 COQ8BQ96D53 544 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 ZC3H10Q96K80 434 aaKnown RBP5.28□□□□□ -1.56
SMC4-223ENST00000493695 TMEM184CQ9NVA4 438 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 AMFRQ9UKV5 643 aa5.28□□□□□ -1.56
SMC4-223ENST00000493695 ERC2O15083 957 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 TJP3O95049 919 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 A1BGP04217 495 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 MYCLP12524 364 aaPredicted RBP5.27□□□□□ -1.57
SMC4-223ENST00000493695 EVA1CP58658 441 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 AWAT1Q58HT5 328 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 MEX3CQ5U5Q3 659 aaKnown RBP5.27□□□□□ -1.57
SMC4-223ENST00000493695 TMEM65Q6PI78 240 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 MEPCEQ7L2J0 689 aaKnown RBP5.27□□□□□ -1.57
SMC4-223ENST00000493695 PIM3Q86V86 326 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 ABRAQ8N0Z2 381 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 CELF5Q8N6W0 485 aaKnown RBP5.27□□□□□ -1.57
SMC4-223ENST00000493695 PRR25Q96S07 402 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 THAP7Q9BT49 309 aaPredicted RBP5.27□□□□□ -1.57
SMC4-223ENST00000493695 GABRQQ9UN88 632 aa5.27□□□□□ -1.57
SMC4-223ENST00000493695 TCRBV5S1A1TA0A578 114 aa5.26□□□□□ -1.57
SMC4-223ENST00000493695 CSF1RP07333 972 aa5.26□□□□□ -1.57
SMC4-223ENST00000493695 RECQLP46063 649 aaPredicted RBP5.26□□□□□ -1.57
SMC4-223ENST00000493695 CDKN1CP49918 316 aaPredicted RBP5.26□□□□□ -1.57
SMC4-223ENST00000493695 SEMA3AQ14563 771 aa5.26□□□□□ -1.57
SMC4-223ENST00000493695 CYP1B1Q16678 543 aa5.26□□□□□ -1.57
SMC4-223ENST00000493695 BCDIN3DQ7Z5W3 292 aaKnown RBP5.26□□□□□ -1.57
SMC4-223ENST00000493695 MARK4Q96L34 752 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms