RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 OTOP3Q7RTS5 596 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 TMC8Q8IU68 726 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 FAM71AQ8IYT1 594 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 NUP93Q8N1F7 819 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 ANKRD52Q8NB46 1076 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 TFAP2BQ92481 460 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 ACSF2Q96CM8 615 aaPredicted RBP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 TRMT2BQ96GJ1 504 aaKnown RBP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 KCNK16Q96T55 309 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 SMOQ99835 787 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 DUSP16Q9BY84 665 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 PNPLA8Q9NP80 782 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 TMEM30AQ9NV96 361 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 USTQ9Y2C2 406 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 NR2E1Q9Y466 385 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 DOCK6Q96HP0 2047 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 NOTCH4Q99466 2003 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 TCF20Q9UGU0 1960 aaKnown RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 M0QYV0 167 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 EPHB6O15197 1021 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 CYP26A1O43174 497 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 BEST1O76090 585 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 MICAL2O94851 1124 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 SETSIPP0DME0 302 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 HMGA1P17096 107 aaKnown RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 GABRR2P28476 465 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 CDC25CP30307 473 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 GBP2P32456 591 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 STAT1P42224 750 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 PLCB2Q00722 1185 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 BST2Q10589 180 aaKnown RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 IFRD2Q12894 506 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ARHGAP15Q53QZ3 475 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 PRSS36Q5K4E3 855 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 FMNL3Q8IVF7 1028 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ADHFE1Q8IWW8 467 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 PLCD3Q8N3E9 789 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 TDRD5Q8NAT2 981 aaKnown RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 STKLD1Q8NE28 680 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ZMIZ2Q8NF64 920 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ZNF606Q8WXB4 792 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 RPGRIP1Q96KN7 1286 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 MYRFLQ96LU7 910 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 NUP58Q9BVL2 599 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 LRRC3Q9BY71 257 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 UBXN6Q9BZV1 441 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 XPO4Q9C0E2 1151 aaKnown RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 GPR88Q9GZN0 384 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 RBSNQ9H1K0 784 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ZNF334Q9HCZ1 680 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 COMMD8Q9NX08 183 aa11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ZFP37Q9Y6Q3 630 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 ZNF638Q14966 1978 aaKnown RBP11.5□□□□□ -0.57
VPS13D-210ENST00000489961 DENND4CQ5VZ89 1909 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 A0A1W2PRU2 124 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 XPO1O14980 1071 aaKnown RBP11.49□□□□□ -0.57
VPS13D-210ENST00000489961 GFPT2O94808 682 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 CALCAP01258 141 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 PNMA6AP0CW24 399 aaPredicted RBP11.49□□□□□ -0.57
VPS13D-210ENST00000489961 SP100P23497 879 aaPredicted RBP11.49□□□□□ -0.57
VPS13D-210ENST00000489961 YWHAQP27348 245 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 CLCN1P35523 988 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 KRT9P35527 623 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 SOX5P35711 763 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 PDE6CP51160 858 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 SLC5A3P53794 718 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 JAM2P57087 298 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 PDE4CQ08493 712 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 MEA1Q16626 185 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 PTPN21Q16825 1174 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 SLC5A9Q2M3M2 681 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 SLC47A2Q86VL8 602 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 TTC30AQ86WT1 665 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 GAS2L3Q86XJ1 694 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 ITFG1Q8TB96 612 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 UBA3Q8TBC4 463 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 ING5Q8WYH8 240 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 IQCDQ96DY2 449 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 TCEAL4Q96EI5 215 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 SLITRK1Q96PX8 696 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 ZSWIM1Q9BR11 485 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 TTLL2Q9BWV7 592 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 EDEM3Q9BZQ6 932 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 ATXN3LQ9H3M9 355 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 FBXO44Q9H4M3 255 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 CDH7Q9ULB5 785 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 OBSL1O75147 1896 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 MYO16Q9Y6X6 1858 aa11.49□□□□□ -0.57
VPS13D-210ENST00000489961 EYSQ5T1H1 3165 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 TNFRSF10BO14763 440 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 F11P03951 625 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 CCDC172P0C7W6 258 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 GJA1P17302 382 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 CEBPBP17676 345 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 PBX1P40424 430 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 CCR2P41597 374 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 PLA2G4AP47712 749 aa11.48□□□□□ -0.57
VPS13D-210ENST00000489961 PPP3CCP48454 512 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms