RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 PGS1Q32NB8 556 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 C3orf36Q3SXR2 165 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 SPDYE7PQ495Y7 208 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 CCDC30Q5VVM6 783 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 IZUMO3Q5VZ72 239 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 LMBRD2Q68DH5 695 aaPredicted RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 OTUD7BQ6GQQ9 843 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 LIN54Q6MZP7 749 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 DARS2Q6PI48 645 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 CACNA2D3Q8IZS8 1091 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 ZGPATQ8N5A5 531 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 ESX1Q8N693 406 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 SNRNP27Q8WVK2 155 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 DPF2Q92785 391 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 RNF31Q96EP0 1072 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 Q96MF0 132 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 SEC62Q99442 399 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 CGRRF1Q99675 332 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 SLC26A6Q9BXS9 759 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 REXO4Q9GZR2 422 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 MAGEH1Q9H213 219 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 SH3GLB2Q9NR46 395 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 RASSF1Q9NS23 344 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 ANKEF1Q9NU02 776 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 TMEM140Q9NV12 185 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 RUVBL1Q9Y265 456 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 AFG3L2Q9Y4W6 797 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 NOX1Q9Y5S8 564 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 GPR45Q9Y5Y3 372 aa3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 TARBP1Q13395 1621 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-204ENST00000489862 FGD5Q6ZNL6 1462 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 RHPN2P1A8MT19 583 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 TOR1BO14657 336 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 KCNAB3O43448 404 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 BAIAP3O94812 1187 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 ENDOD1O94919 500 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 ESRRBO95718 433 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 AMY1AP04745 511 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 VCAM1P19320 739 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 GCSHP23434 173 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 CXCR5P32302 372 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 LIFRP42702 1097 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 NR1H2P55055 460 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 ZNF543Q08ER8 600 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 MGAT2Q10469 447 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 GJC2Q5T442 439 aaPredicted RBP3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 SP5Q6BEB4 398 aaPredicted RBP3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 ADAMTS18Q8TE60 1221 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 LRTOMTQ8WZ04 291 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 PHKBQ93100 1093 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 NACC2Q96BF6 587 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 ZBTB10Q96DT7 871 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 C1GALT1C1Q96EU7 318 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 RNPEPQ9H4A4 650 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 ZMAT3Q9HA38 289 aaKnown RBP3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 TBC1D22BQ9NU19 505 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 FAM30AQ9NZY2 134 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 STAP2Q9UGK3 403 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 SOGA1O94964 1423 aa3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 COL11A2P13942 1736 aaPredicted RBP3.68□□□□□ -1.82
DEPDC1-204ENST00000489862 POLR2AP24928 1970 aaKnown RBP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 POM121BA6NF01 834 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 K7ENM7 598 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 GPANK1O95872 356 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 CSTBP04080 98 aaKnown RBP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 ELLP55199 621 aaPredicted RBP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 CXADRP78310 365 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 MPP3Q13368 585 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 PDE1CQ14123 709 aaPredicted RBP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 ANO6Q4KMQ2 910 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 FAAH2Q6GMR7 532 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 ARMC6Q6NXE6 501 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 SEM1Q6ZVN7 128 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 DPP9Q86TI2 863 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 CPOQ8IVL8 374 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 LSMEM1Q8N8F7 131 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 ATG16L2Q8NAA4 619 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 CASKIN2Q8WXE0 1202 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 MARS2Q96GW9 593 aaKnown RBP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 RSRC1Q96IZ7 334 aaKnown RBP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 TMEM120AQ9BXJ8 343 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 GSTO2Q9H4Y5 243 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 RETREG1Q9H6L5 497 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 INSL6Q9Y581 213 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 WRNQ14191 1432 aaPredicted RBP eCLIP3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 USP19O94966 1318 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 IFT140Q96RY7 1462 aa3.67□□□□□ -1.82
DEPDC1-204ENST00000489862 TCRBV7S2A1N4TA0A589 114 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 CAPN8A6NHC0 703 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 LRRC14BA6NHZ5 514 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 B4E171 279 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 IPO5O00410 1097 aaKnown RBP3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 TRIM38O00635 465 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 TMCC2O75069 709 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 GPR32O75388 356 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 FGF18O76093 207 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 HARSP12081 509 aaKnown RBP3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 CKBP12277 381 aa3.66□□□□□ -1.82
DEPDC1-204ENST00000489862 MYF5P13349 255 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms