RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 RPS6KA1Q15418 735 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 NFE2Q16621 373 aaPredicted RBP12.1□□□□□ -0.47
C9orf3-220ENST00000489318 RTP2Q5QGT7 225 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 KCNT2Q6UVM3 1135 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 C4orf50Q6ZRC1 276 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 ANKS3Q6ZW76 656 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 SLC26A9Q7LBE3 791 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 TMCO2Q7Z6W1 182 aaPredicted RBP12.1□□□□□ -0.47
C9orf3-220ENST00000489318 DCP1BQ8IZD4 617 aaKnown RBP12.1□□□□□ -0.47
C9orf3-220ENST00000489318 SCML4Q8N228 414 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 COLGALT1Q8NBJ5 622 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 PHOSPHO2Q8TCD6 241 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 PIK3R5Q8WYR1 880 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 PIWIL1Q96J94 861 aaKnown RBP12.1□□□□□ -0.47
C9orf3-220ENST00000489318 ZNF558Q96NG5 402 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 MCEEQ96PE7 176 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 TMEM209Q96SK2 561 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 SMOQ99835 787 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 SELENOOQ9BVL4 669 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 HERC2P3Q9BVR0 1158 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 TRIM7Q9C029 511 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 SYNCQ9H7C4 482 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 CHST7Q9NS84 486 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 TMEM30AQ9NV96 361 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 TMLHEQ9NVH6 421 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 IP6K2Q9UHH9 426 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 TMEM59LQ9UK28 342 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 MRPL42Q9Y6G3 142 aaKnown RBP12.1□□□□□ -0.47
C9orf3-220ENST00000489318 GBF1Q92538 1859 aa12.1□□□□□ -0.47
C9orf3-220ENST00000489318 NT5C1B-RDH14C9J2C7 533 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 H7C4K7 107 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 AP1G2O75843 785 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 GJB6O95452 261 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 SOD2P04179 222 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 PPM1AP35813 382 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 RGS7P49802 495 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 SLC6A3Q01959 620 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 OGDHQ02218 1023 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 ADCY1Q08828 1119 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 SMARCB1Q12824 385 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 PIGHQ14442 188 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 CTXN3Q4LDR2 81 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 FAM102AQ5T9C2 384 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 ZNF572Q7Z3I7 529 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 GPR65Q8IYL9 337 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 JOSD2Q8TAC2 188 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 KHSRPQ92945 711 aaKnown RBP eCLIP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 BTBD6Q96KE9 485 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 MED10Q9BTT4 135 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 TTPALQ9BTX7 342 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 CARD9Q9H257 536 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 DMAP1Q9NPF5 467 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 ST7Q9NRC1 585 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 METTL5Q9NRN9 209 aaKnown RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 ASNSD1Q9NWL6 643 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 CXXC1Q9P0U4 656 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 PCDH10Q9P2E7 1040 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 MTRRQ9UBK8 725 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 RNF14Q9UBS8 474 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 STK39Q9UEW8 545 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 PACSIN2Q9UNF0 486 aaPredicted RBP12.09□□□□□ -0.47
C9orf3-220ENST00000489318 BACE2Q9Y5Z0 518 aa12.09□□□□□ -0.47
C9orf3-220ENST00000489318 CCDC66A2RUB6 948 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 C2CD4BA6NLJ0 364 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 GOLGA8SH3BPF8 625 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 PSTPIP1O43586 416 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 FBXO21O94952 628 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 RFC1P35251 1148 aaPredicted RBP12.08□□□□□ -0.48
C9orf3-220ENST00000489318 GTF2F1P35269 517 aaKnown RBP eCLIP12.08□□□□□ -0.48
C9orf3-220ENST00000489318 MAGEA11P43364 429 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 PEX5P50542 639 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 CACNA2D1P54289 1103 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 ITIH3Q06033 890 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 ADIGQ0VDE8 80 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 GPR17Q13304 367 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 ACAP1Q15027 740 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 USP41Q3LFD5 358 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 DCAF12L1Q5VU92 463 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 SLC8B1Q6J4K2 584 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 TRNP1Q6NT89 227 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 DCUN1D2Q6PH85 259 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 VSTM1Q6UX27 236 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 PHLDB2Q86SQ0 1253 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 DDX53Q86TM3 631 aaKnown RBP12.08□□□□□ -0.48
C9orf3-220ENST00000489318 CREG2Q8IUH2 290 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 HERC6Q8IVU3 1022 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 RASGEF1CQ8N431 466 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 COG1Q8WTW3 980 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 C2orf15Q8WU43 125 aaKnown RBP12.08□□□□□ -0.48
C9orf3-220ENST00000489318 CLP1Q92989 425 aaKnown RBP12.08□□□□□ -0.48
C9orf3-220ENST00000489318 PBKQ96KB5 322 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 YME1L1Q96TA2 773 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 INSL6Q9Y581 213 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 PCDHA3Q9Y5H8 950 aa12.08□□□□□ -0.48
C9orf3-220ENST00000489318 ZBBXA8MT70 800 aa12.07□□□□□ -0.48
C9orf3-220ENST00000489318 SART1O43290 800 aaKnown RBP12.07□□□□□ -0.48
C9orf3-220ENST00000489318 SPOPO43791 374 aa12.07□□□□□ -0.48
C9orf3-220ENST00000489318 SRGAP2O75044 1071 aa12.07□□□□□ -0.48
C9orf3-220ENST00000489318 DAB1O75553 588 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms