RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 YAF2Q8IY57 180 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 SDR16C5Q8N3Y7 309 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 OSCP1Q8WVF1 389 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 IPCEF1Q8WWN9 437 aaPredicted RBP7.23□□□□□ -1.25
USP40-213ENST00000483216 GLG1Q92896 1179 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 UROC1Q96N76 676 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 PNPLA8Q9NP80 782 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 ARHGEF3Q9NR81 526 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 TRMT13Q9NUP7 481 aaKnown RBP7.23□□□□□ -1.25
USP40-213ENST00000483216 MT-ND5P03915 603 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 ERBB2P04626 1255 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 SOX10P56693 466 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 HTRA4P83105 476 aaPredicted RBP7.22□□□□□ -1.25
USP40-213ENST00000483216 NPY5RQ15761 445 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 PTCHD3Q3KNS1 767 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 CERCAMQ5T4B2 595 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 DEPDC1Q5TB30 811 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 CCSAPQ6IQ19 270 aaPredicted RBP7.22□□□□□ -1.25
USP40-213ENST00000483216 KSR2Q6VAB6 950 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 UNC13DQ70J99 1090 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 PRIMA1Q86XR5 153 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 SPARTQ8N0X7 666 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 FAM98AQ8NCA5 519 aaKnown RBP7.22□□□□□ -1.25
USP40-213ENST00000483216 SOCS4Q8WXH5 440 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 SNX22Q96L94 193 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 TRIM5Q9C035 493 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 PRDM13Q9H4Q3 707 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 ARNT2Q9HBZ2 717 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 SEMA4GQ9NTN9 838 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 MID2Q9UJV3 735 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 HDAC9Q9UKV0 1011 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 CORO2BQ9UQ03 480 aa7.22□□□□□ -1.25
USP40-213ENST00000483216 H7C4K7 107 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 PMM2O15305 246 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 INMTO95050 263 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 MYL1P05976 194 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 JUPP14923 745 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 ACVR2AP27037 513 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 ADORA2AP29274 412 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 CARSP49589 748 aaKnown RBP7.21□□□□□ -1.26
USP40-213ENST00000483216 CLCN2P51788 898 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 ZNF543Q08ER8 600 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 CCNIQ14094 377 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 FCRL6Q6DN72 434 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 ANKRD16Q6P6B7 361 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 WDR53Q7Z5U6 358 aaPredicted RBP7.21□□□□□ -1.26
USP40-213ENST00000483216 IZUMO1Q8IYV9 350 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 ZC3H10Q96K80 434 aaKnown RBP7.21□□□□□ -1.26
USP40-213ENST00000483216 HAPLN3Q96S86 360 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 GBA2Q9HCG7 927 aaPredicted RBP7.21□□□□□ -1.26
USP40-213ENST00000483216 ITGB1BP2Q9UKP3 347 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 CAPN11Q9UMQ6 739 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 SNX14Q9Y5W7 946 aa7.21□□□□□ -1.26
USP40-213ENST00000483216 RRP9O43818 475 aaKnown RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 FESP07332 822 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 ANXA2P07355 339 aaKnown RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 BTF3P20290 206 aaKnown RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 IL1R2P27930 398 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 ITPKBP27987 946 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 PTDSS1P48651 473 aaKnown RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 CPT1AP50416 773 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 CASP5P51878 434 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 BCAT1P54687 386 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 ELLP55199 621 aaPredicted RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 IFIT5Q13325 482 aaKnown RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 ZNF750Q32MQ0 723 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 CACHD1Q5VU97 1274 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 SMCR8Q8TEV9 937 aaPredicted RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 NAA15Q9BXJ9 866 aaKnown RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 KLK15Q9H2R5 256 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 FAM83DQ9H4H8 585 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 DKK4Q9UBT3 224 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 ST3GAL5Q9UNP4 418 aa7.2□□□□□ -1.26
USP40-213ENST00000483216 COL11A2P13942 1736 aaPredicted RBP7.2□□□□□ -1.26
USP40-213ENST00000483216 POLR2AP24928 1970 aaKnown RBP7.19□□□□□ -1.26
USP40-213ENST00000483216 RASAL1O95294 804 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 PARP1P09874 1014 aaKnown RBP7.19□□□□□ -1.26
USP40-213ENST00000483216 NDUFB7P17568 137 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 PTH2RP49190 550 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 CCT8P50990 548 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 FAM153CQ494X1 144 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 AKNAD1Q5T1N1 836 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 KCTD20Q7Z5Y7 419 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 RP9Q8TA86 221 aaKnown RBP7.19□□□□□ -1.26
USP40-213ENST00000483216 DNAJB14Q8TBM8 379 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 TMEM171Q8WVE6 324 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 R3HDM4Q96D70 268 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 RSPRY1Q96DX4 576 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 IL17RBQ9NRM6 502 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 DLL3Q9NYJ7 618 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 ZNF212Q9UDV6 495 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 NACADO15069 1562 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 RB1CC1Q8TDY2 1594 aa7.19□□□□□ -1.26
USP40-213ENST00000483216 AQP7P3A6NL99 342 aa7.18□□□□□ -1.26
USP40-213ENST00000483216 RAB27BO00194 218 aa7.18□□□□□ -1.26
USP40-213ENST00000483216 KPNA5O15131 536 aa7.18□□□□□ -1.26
USP40-213ENST00000483216 CD3EAPO15446 510 aaKnown RBP7.18□□□□□ -1.26
USP40-213ENST00000483216 SUV39H1O43463 412 aa7.18□□□□□ -1.26
USP40-213ENST00000483216 RGS10O43665 173 aa7.18□□□□□ -1.26
USP40-213ENST00000483216 SRGAP2O75044 1071 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms