RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 UBXN11Q5T124 520 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 KDELC1Q6UW63 502 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 NPNTQ6UXI9 565 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 ABHD15Q6UXT9 468 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 LIX1LQ8IVB5 337 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 LRRC71Q8N4P6 559 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 CHST13Q8NET6 341 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 Q8NFD4 153 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS41-212ENST00000482217 TDRD7Q8NHU6 1098 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 RABGGTAQ92696 567 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 HOXB13Q92826 284 aaPredicted RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 C18orf8Q96DM3 657 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 TMEM41AQ96HV5 264 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 MAELQ96JY0 434 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 TMEM237Q96Q45 408 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 PIGSQ96S52 555 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 YME1L1Q96TA2 773 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 MXD3Q9BW11 206 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 AGXT2Q9BYV1 514 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 SLC7A5P2Q9GIP4 190 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 RWDD1Q9H446 243 aaPredicted RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 YY1AP1Q9H869 796 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 SEC61A2Q9H9S3 476 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 BCO1Q9HAY6 547 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 PAPOLBQ9NRJ5 636 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 HAUS2Q9NVX0 235 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 MCM9Q9NXL9 1143 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 ORC3Q9UBD5 711 aaPredicted RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 ZMAT5Q9UDW3 170 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 ADD3Q9UEY8 706 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 VPS28Q9UK41 221 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 CFAP45Q9UL16 551 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 PCDHGB4Q9UN71 923 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 DUSP12Q9UNI6 340 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 LIMCH1Q9UPQ0 1083 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 NR2E1Q9Y466 385 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 CFAP20Q9Y6A4 193 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 CCDC154A6NI56 674 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 RHPN2P1A8MT19 583 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 FAM227AF5H4B4 570 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 IRAK2O43187 625 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 ZBTB43O43298 467 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 B4GALT4O60513 344 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 PTP4A3O75365 173 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 SLC22A3O75751 556 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 SGPL1O95470 568 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 RPLP2P05387 115 aaKnown RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 PCP11498 1178 aaKnown RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 MYCLP12524 364 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 GYPEP15421 78 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 RPS2P15880 293 aaKnown RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 PORP16435 677 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 IL11P20809 199 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 ATP5F1P24539 256 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 CRHR1P34998 444 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 MTHFRP42898 656 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 BPIFB4P59827 614 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 ADAM8P78325 824 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 ATP2C1P98194 919 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 DUSP2Q05923 314 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 KLHL30Q0D2K2 578 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 PMS2P11Q13670 270 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 STARD3Q14849 445 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 TAF7Q15545 349 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 TBR1Q16650 682 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 RNF151Q2KHN1 245 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 C5orf22Q49AR2 442 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 TAF3Q5VWG9 929 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 KRT40Q6A162 431 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 PGBD2Q6P3X8 592 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 ARHGEF18Q6ZSZ5 1173 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 GALNT7Q86SF2 657 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 RAB11FIP4Q86YS3 637 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 TRIML1Q8N9V2 468 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 CYFIP2Q96F07 1278 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 SPATA17Q96L03 361 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 MANSC1Q9H8J5 431 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 CCDC177Q9NQR7 707 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 TLR9Q9NR96 1032 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 CHCHD3Q9NX63 227 aaKnown RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 ING3Q9NXR8 418 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 CTNNA3Q9UI47 895 aa4.52□□□□□ -1.69
VPS41-212ENST00000482217 MAGED2Q9UNF1 606 aaPredicted RBP4.52□□□□□ -1.69
VPS41-212ENST00000482217 SYNJ2BP-COX16A0A087WUM0 186 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 PI4KAP2A4QPH2 592 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 CCDC69A6NI79 296 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 H0Y626 953 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 H3BML4 177 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 ACKR2O00590 384 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 CAPN9O14815 690 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 FYB1O15117 783 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 PGM3O95394 542 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 ALDH2P05091 517 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 ALOX12P18054 663 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 TFEBP19484 476 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 TMOD1P28289 359 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 ADSLP30566 484 aaPredicted RBP4.51□□□□□ -1.69
VPS41-212ENST00000482217 POLD2P49005 469 aa4.51□□□□□ -1.69
VPS41-212ENST00000482217 MXI1P50539 228 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms