RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 RAP1GAP2Q684P5 730 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 CAVIN1Q6NZI2 390 aaKnown RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 GAREM2Q75VX8 874 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 WFDC8Q8IUA0 241 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 SP8Q8IXZ3 490 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 YAF2Q8IY57 180 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 DPP10Q8N608 796 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 CDYL2Q8N8U2 506 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 ZBTB8BQ8NAP8 495 aaPredicted RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 CTNNBL1Q8WYA6 563 aaPredicted RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 ARHGEF2Q92974 986 aaKnown RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 FAM162AQ96A26 154 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 Q96M66 194 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 RAB3IPQ96QF0 476 aaPredicted RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 MANSC1Q9H8J5 431 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 MID1IP1Q9NPA3 183 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 A1CFQ9NQ94 594 aaKnown RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 AP5S1Q9NUS5 200 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 SELENONQ9NZV5 590 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 MARCH2Q9P0N8 246 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 CNOT7Q9UIV1 285 aaKnown RBP8.67□□□□□ -1.02
LSM5-210ENST00000480956 HPCAL4Q9UM19 191 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 ASB1Q9Y576 335 aa8.67□□□□□ -1.02
LSM5-210ENST00000480956 C2orf81A6NN90 581 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 TSPAN4O14817 238 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 ENTPD3O75355 529 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 SNRPA1P09661 255 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 PECAM1P16284 738 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 AMPHP49418 695 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 GPR15P49685 360 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 RBM5P52756 815 aaKnown RBP eCLIP8.66□□□□□ -1.02
LSM5-210ENST00000480956 HDAC4P56524 1084 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 SLC26A5P58743 744 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 ROM1Q03395 351 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 HSP90B2PQ58FF3 399 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 EMC10Q5UCC4 262 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 NUTM2GQ5VZR2 741 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 OLFM4Q6UX06 510 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 C1orf229Q6ZS94 237 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 SYT13Q7L8C5 426 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 MPP5Q8N3R9 675 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 FRMD1Q8N878 549 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 POGLUT1Q8NBL1 392 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 OR6J1Q8NGC5 347 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 NCSTNQ92542 709 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 TNPO1Q92973 898 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 COX4I2Q96KJ9 171 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 ALPK1Q96QP1 1244 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 SPXQ9BT56 116 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 ANKRD2Q9GZV1 360 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 MTG2Q9H4K7 406 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 GSX1Q9H4S2 264 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 SNX15Q9NRS6 342 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 USP40Q9NVE5 1235 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 MID2Q9UJV3 735 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 CA14Q9ULX7 337 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 CCDC151A5D8V7 595 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 AKR1B15C9JRZ8 316 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 RBAK-RBAKDNI3L0D1 243 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 PCDH17O14917 1159 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 WDR46O15213 610 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 HNRNPRO43390 633 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 NOL3O60936 208 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 RASSF9O75901 435 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 ADAMTS2O95450 1211 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 HOXA11P31270 313 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 PPARGP37231 505 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 GARSP41250 739 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 NSUN2Q08J23 767 aaKnown RBP eCLIP8.66□□□□□ -1.02
LSM5-210ENST00000480956 CAMK1Q14012 370 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 BTBD16Q32M84 506 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 TTC22Q5TAA0 569 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 CCDC28AQ8IWP9 274 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 GPR156Q8NFN8 814 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 OR56A3Q8NH54 315 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 UBASH3BQ8TF42 649 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 MFSD14AQ96MC6 490 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 LBHD1Q9BQE6 289 aaPredicted RBP8.66□□□□□ -1.02
LSM5-210ENST00000480956 TEX12Q9BXU0 123 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 VPS16Q9H269 839 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 RMI1Q9H9A7 625 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 X6R8D5 127 aa8.66□□□□□ -1.02
LSM5-210ENST00000480956 C22orf46C9J442 243 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 TNPO2O14787 897 aaKnown RBP8.65□□□□□ -1.03
LSM5-210ENST00000480956 PROM1O43490 865 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 KLHL41O60662 606 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 GUCY1B2O75343 617 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 PNPP00491 289 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 PDHA1P08559 390 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 BMP4P12644 408 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 EPHA5P54756 1037 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 SRSF11Q05519 484 aaKnown RBP8.65□□□□□ -1.03
LSM5-210ENST00000480956 SOX4Q06945 474 aaPredicted RBP8.65□□□□□ -1.03
LSM5-210ENST00000480956 EIF2B5Q13144 721 aaKnown RBP8.65□□□□□ -1.03
LSM5-210ENST00000480956 HABP2Q14520 560 aaPredicted RBP8.65□□□□□ -1.03
LSM5-210ENST00000480956 SLC5A9Q2M3M2 681 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 ALG11Q2TAA5 492 aa8.65□□□□□ -1.03
LSM5-210ENST00000480956 CCDC178Q5BJE1 867 aa8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms