RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 NOMO3P69849 1222 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 HABP2Q14520 560 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 KIF22Q14807 665 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 INO80DQ53TQ3 878 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 C3orf38Q5JPI3 329 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 ZNF648Q5T619 568 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 TCERG1LQ5VWI1 586 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 UBE3BQ7Z3V4 1068 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 PLEKHH3Q7Z736 793 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 PCSK9Q8NBP7 692 aaKnown RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 NLGN4YQ8NFZ3 816 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 RAPGEF4Q8WZA2 1011 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 NEIL1Q96FI4 390 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 DPYSL5Q9BPU6 564 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 NDC1Q9BTX1 674 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 BRIP1Q9BX63 1249 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 WDR12Q9GZL7 423 aaKnown RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 TTYH1Q9H313 450 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 OAZ3Q9UMX2 235 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 LAMB2P55268 1798 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 CFAP54Q96N23 3096 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 ZSWIM8A7E2V4 1837 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 HOXA3O43365 443 aaPredicted RBP6.3□□□□□ -1.4
UPF3A-205ENST00000479712 TBC1D4O60343 1298 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 CDC14BO60729 498 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 GNAI2P04899 355 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 GJB1P08034 283 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 SRGNP10124 158 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 ALAS1P13196 640 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 ITGB8P26012 769 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 RAP1GAPP47736 663 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 CLRN1P58418 232 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 SLC13A2Q13183 592 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 PMS2P11Q13670 270 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 ANKS6Q68DC2 871 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 PRR5LQ6MZQ0 368 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 HIBCHQ6NVY1 386 aaPredicted RBP6.3□□□□□ -1.4
UPF3A-205ENST00000479712 ZNF365Q70YC5 407 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 FRMD5Q7Z6J6 570 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 GPR135Q8IZ08 494 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 AOPEPQ8N6M6 819 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 ATXN2LQ8WWM7 1075 aaKnown RBP6.3□□□□□ -1.4
UPF3A-205ENST00000479712 MASTLQ96GX5 879 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 COLEC11Q9BWP8 271 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 DPH1Q9BZG8 443 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 ADAM7Q9H2U9 754 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 AGO3Q9H9G7 860 aaKnown RBP6.3□□□□□ -1.4
UPF3A-205ENST00000479712 MSL2Q9HCI7 577 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 RLIMQ9NVW2 624 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 JKAMPQ9P055 326 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 COL20A1Q9P218 1284 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 THEGQ9P2T0 379 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 CDC23Q9UJX2 597 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 KDM3BQ7LBC6 1761 aa6.3□□□□□ -1.4
UPF3A-205ENST00000479712 COL2A1P02458 1487 aaPredicted RBP6.29□□□□□ -1.4
UPF3A-205ENST00000479712 TRIM43BA6NCK2 446 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 UBE2Q2LH0YL09 131 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 BTN3A1O00481 513 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 APOL1O14791 398 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 NOBOXO60393 691 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 NBNO60934 754 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 HAUS5O94927 633 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 ABHD16AO95870 558 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 AMHP03971 560 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 RARBP10826 455 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 CR2P20023 1033 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 SLC6A4P31645 630 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 KCNC1P48547 511 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 MAPK10P53779 464 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 RPS16P62249 146 aaKnown RBP6.29□□□□□ -1.4
UPF3A-205ENST00000479712 TNFAIP2Q03169 654 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 SREBF2Q12772 1141 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 TRIM14Q14142 442 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 SLC44A4Q53GD3 710 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 KLHDC7AQ5VTJ3 777 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 FAM111BQ6SJ93 734 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 ARHGEF18Q6ZSZ5 1173 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 XYLT1Q86Y38 959 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 RNF152Q8N8N0 203 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 BRI3BPQ8WY22 251 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 TRIM43Q96BQ3 446 aaPredicted RBP6.29□□□□□ -1.4
UPF3A-205ENST00000479712 NMD3Q96D46 503 aaKnown RBP6.29□□□□□ -1.4
UPF3A-205ENST00000479712 CDCA5Q96FF9 252 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 BORCS6Q96GS4 357 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 ZNF512Q96ME7 567 aaPredicted RBP6.29□□□□□ -1.4
UPF3A-205ENST00000479712 HDAC5Q9UQL6 1122 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 PCDHGB2Q9Y5G2 931 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 SPTBN4Q9H254 2564 aa6.29□□□□□ -1.4
UPF3A-205ENST00000479712 TJP1Q07157 1748 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 SETXQ7Z333 2677 aaKnown RBP6.28□□□□□ -1.4
UPF3A-205ENST00000479712 PRSS29PA6NIE9 313 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 TBKBP1A7MCY6 615 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 FGF18O76093 207 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 POMCP01189 267 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 IL6STP40189 918 aaPredicted RBP6.28□□□□□ -1.4
UPF3A-205ENST00000479712 PSMC1P62191 440 aaKnown RBP6.28□□□□□ -1.4
UPF3A-205ENST00000479712 MRPS5P82675 430 aaKnown RBP6.28□□□□□ -1.4
UPF3A-205ENST00000479712 DUSP8Q13202 625 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 PKN1Q16512 942 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms