RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CACNA2D1P54289 1103 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 USP46P62068 366 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 LRRC63Q05C16 580 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 INCA1Q0VD86 236 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 KRT39Q6A163 491 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 ANKRD40Q6AI12 368 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 SPOPLQ6IQ16 392 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 SCARA5Q6ZMJ2 495 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 SMG9Q9H0W8 520 aaKnown RBP23.14■■□□□ 1.29
COL9A3-211ENST00000477612 CYP3A43Q9HB55 503 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 CCL26Q9Y258 94 aa23.14■■□□□ 1.29
COL9A3-211ENST00000477612 CLDN5O00501 218 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 KINO60870 393 aaKnown RBP23.13■■□□□ 1.29
COL9A3-211ENST00000477612 EPB41P11171 864 aaKnown RBP23.13■■□□□ 1.29
COL9A3-211ENST00000477612 TCF3P15923 654 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 PPP1R2P41236 205 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 PMS1P54277 932 aaKnown RBP23.13■■□□□ 1.29
COL9A3-211ENST00000477612 MAMSTRQ6ZN01 415 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 RALGPS2Q86X27 583 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-211ENST00000477612 MAML2Q8IZL2 1156 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-211ENST00000477612 ZFYVE19Q96K21 471 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 TSG101Q99816 390 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 IMPG2Q9BZV3 1241 aa23.13■■□□□ 1.29
COL9A3-211ENST00000477612 APOBEC3GQ9HC16 384 aaKnown RBP23.13■■□□□ 1.29
COL9A3-211ENST00000477612 ATP8B3O60423 1300 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 TRAV19A0A0A6YYK7 116 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 SLC16A3O15427 465 aaKnown RBP23.12■■□□□ 1.29
COL9A3-211ENST00000477612 STX10O60499 249 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 USP17L7P0C7H9 530 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 CCNE1P24864 410 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 NDST1P52848 882 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 FOXR2Q6PJQ5 311 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 FAM35AQ86V20 835 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 FUKQ8N0W3 1084 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 RIN3Q8TB24 985 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 EEF2KMTQ96G04 330 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 DHTKD1Q96HY7 919 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-211ENST00000477612 SLC22A12Q96S37 553 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 IER2Q9BTL4 223 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 GKN1Q9NS71 199 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 GTSE1Q9NYZ3 720 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 IL37Q9NZH6 218 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 MAN1B1Q9UKM7 699 aa23.12■■□□□ 1.29
COL9A3-211ENST00000477612 CHRNB1P11230 501 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 PDE6CP51160 858 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 ACOT1Q86TX2 421 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 NUP93Q8N1F7 819 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 SMARCD1Q96GM5 515 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 CYP2S1Q96SQ9 504 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 CSNK1G1Q9HCP0 422 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 TRPM5Q9NZQ8 1165 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 FBXO4Q9UKT5 387 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 COQ4Q9Y3A0 265 aa23.11■■□□□ 1.29
COL9A3-211ENST00000477612 C2orf78A6NCI8 922 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 ZNF840PA6NDX5 716 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 SPECC1L-ADORA2AF8WAN1 911 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 TNFRSF10BO14763 440 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 CLSTN1O94985 981 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 CTHP32929 405 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 KPNA1P52294 538 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-211ENST00000477612 STIM1Q13586 685 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 ZNF77Q15935 545 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 ZNF528Q3MIS6 628 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 FBXL13Q8NEE6 735 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 OVCA2Q8WZ82 227 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 KCNK16Q96T55 309 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 NIF3L1Q9GZT8 377 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 CHRDQ9H2X0 955 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 FAM124BQ9H5Z6 455 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-211ENST00000477612 COMMD8Q9NX08 183 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 RAB20Q9NX57 234 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 CHMP5Q9NZZ3 219 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 HMGXB4Q9UGU5 601 aa23.1■■□□□ 1.29
COL9A3-211ENST00000477612 NDRG2Q9UN36 371 aaKnown RBP23.1■■□□□ 1.29
COL9A3-211ENST00000477612 FAM92AA1XBS5 289 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 TRIM49BA6NDI0 452 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 PSMA7O14818 248 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 RTN3O95197 1032 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-211ENST00000477612 OLFM2O95897 454 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 SP9P0CG40 484 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 CD44P16070 742 aaKnown RBP23.09■■□□□ 1.29
COL9A3-211ENST00000477612 HDCP19113 662 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 BMP6P22004 513 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 MXI1P50539 228 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 TNK2Q07912 1038 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 TAF10Q12962 218 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 USP4Q13107 963 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 RUNX3Q13761 415 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 ITPRIPL2Q3MIP1 535 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 TXNDC11Q6PKC3 985 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 KIAA1958Q8N8K9 716 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 ARL14EPQ8N8R7 260 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-211ENST00000477612 CCDC150Q8NCX0 1101 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 WHAMMQ8TF30 809 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 SEMA4DQ92854 862 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 MMRN2Q9H8L6 949 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 LMAN1LQ9HAT1 526 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 TRPC7Q9HCX4 862 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 DMAP1Q9NPF5 467 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-211ENST00000477612 HPS4Q9NQG7 708 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms