RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 GVINP1Q7Z2Y8 2422 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 F5P12259 2224 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 SHISA7A6NL88 538 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 CETN3O15182 167 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 P4HA1P13674 534 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 ATICP31939 592 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 PPP1R2P41236 205 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 MAGEA11P43364 429 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 CASP4P49662 377 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 IFRD2Q12894 506 aaPredicted RBP16.11■□□□□ 0.17
VARS-223ENST00000474643 NR1H3Q13133 447 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 MTF1Q14872 753 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 CCDC142Q17RM4 750 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 ZNF699Q32M78 642 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 KLHL10Q6JEL2 608 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 TXNDC11Q6PKC3 985 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 Q6ZS52 159 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 DENND5BQ6ZUT9 1274 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 ERMP1Q7Z2K6 904 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.11■□□□□ 0.17
VARS-223ENST00000474643 TMEM150AQ86TG1 271 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 ZNF687Q8N1G0 1237 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 SYNPOQ8N3V7 929 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 CXorf38Q8TB03 319 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 ATP2A3Q93084 1043 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 MED10Q9BTT4 135 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 DUS2Q9NX74 493 aaKnown RBP16.11■□□□□ 0.17
VARS-223ENST00000474643 FRYLO94915 3013 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 COL4A2P08572 1712 aa16.11■□□□□ 0.17
VARS-223ENST00000474643 EP300Q09472 2414 aaPredicted RBP16.1■□□□□ 0.17
VARS-223ENST00000474643 CHURC1-FNTBB4DL54 471 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 ATG13O75143 517 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 PSMC2P35998 433 aaKnown RBP16.1■□□□□ 0.17
VARS-223ENST00000474643 FNTBP49356 437 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 AP3M2P53677 418 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 SIM2Q14190 667 aaPredicted RBP16.1■□□□□ 0.17
VARS-223ENST00000474643 ZNF268Q14587 947 aaPredicted RBP16.1■□□□□ 0.17
VARS-223ENST00000474643 NFIL3Q16649 462 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 EDRF1Q3B7T1 1238 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 SCARA3Q6AZY7 606 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 FAM171BQ6P995 826 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 FAM186BQ8IYM0 893 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 MYCBPAPQ8TBZ2 947 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 KBTBD7Q8WVZ9 684 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 PCED1BQ96HM7 432 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 MYRFLQ96LU7 910 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 PKMYT1Q99640 499 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 ELOVL4Q9GZR5 314 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 CRTAC1Q9NQ79 661 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 SLC8A2Q9UPR5 921 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 SPTBN4Q9H254 2564 aa16.1■□□□□ 0.17
VARS-223ENST00000474643 LRRIQ3A6PVS8 624 aaPredicted RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 LILRB5O75023 590 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 TACC1O75410 805 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 EPB41P11171 864 aaKnown RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 ARSAP15289 507 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 HDCP19113 662 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 SDHBP21912 280 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 MYL6P60660 151 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 MORC3Q14149 939 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 SKOR2Q2VWA4 1001 aaPredicted RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 COBLL1Q53SF7 1204 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 ZNF667Q5HYK9 610 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 TDRD10Q5VZ19 366 aaKnown RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 SCARA5Q6ZMJ2 495 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 MAMSTRQ6ZN01 415 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 DGLUCYQ7Z3D6 616 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 LONP2Q86WA8 852 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 ARL14EPQ8N8R7 260 aaPredicted RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 PARD3BQ8TEW8 1205 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 DHTKD1Q96HY7 919 aaPredicted RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 SPATA17Q96L03 361 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 CEP295NLQ96MC4 621 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 SLITRK1Q96PX8 696 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 CYP2S1Q96SQ9 504 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 FAM83CQ9BQN1 747 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 MRPL45Q9BRJ2 306 aaKnown RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 NUP62CLQ9H1M0 184 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 CLSTN2Q9H4D0 955 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 MMRN2Q9H8L6 949 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 KIAA1468Q9P260 1216 aa16.09■□□□□ 0.17
VARS-223ENST00000474643 ZNF638Q14966 1978 aaKnown RBP16.09■□□□□ 0.17
VARS-223ENST00000474643 F8VP50 259 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 AKAP3O75969 853 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 CST3P01034 146 aaPredicted RBP16.08■□□□□ 0.16
VARS-223ENST00000474643 PTPN1P18031 435 aaKnown RBP16.08■□□□□ 0.16
VARS-223ENST00000474643 CNR2P34972 360 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 PPP3CCP48454 512 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 VAMP7P51809 220 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 LRRC63Q05C16 580 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 NCOA4Q13772 614 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 CCINQ13939 588 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 PUM1Q14671 1186 aaKnown RBP eCLIP16.08■□□□□ 0.16
VARS-223ENST00000474643 ANKRD40Q6AI12 368 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 LAIR1Q6GTX8 287 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 INTS8Q75QN2 995 aaKnown RBP16.08■□□□□ 0.16
VARS-223ENST00000474643 TRIML1Q8N9V2 468 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 B3GALNT2Q8NCR0 500 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 TMC2Q8TDI7 906 aa16.08■□□□□ 0.16
VARS-223ENST00000474643 SH3RF2Q8TEC5 729 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms