RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TACC1O75410 805 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 CLSTN1O94985 981 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 CST3P01034 146 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-210ENST00000472880 HDCP19113 662 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 HOXC13P31276 330 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 ATXN1P54253 815 aaKnown RBP21.08■□□□□ 0.97
COL9A3-210ENST00000472880 WDR72Q3MJ13 1102 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 FBXO43Q4G163 708 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 RESP18Q5W5W9 173 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 CEP57L1Q8IYX8 460 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 FAM160A2Q8N612 972 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-210ENST00000472880 RTKNQ9BST9 563 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 SEMA4GQ9NTN9 838 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 ARHGAP26Q9UNA1 814 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 F8VP50 259 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 EXOC3O60645 756 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 PHACTR2O75167 634 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 TCF3P15923 654 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 PFKLP17858 780 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 PXNP49023 591 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-210ENST00000472880 GALK1P51570 392 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 USP46P62068 366 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 NR1H3Q13133 447 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 CUL4BQ13620 913 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 KNOP1Q1ED39 458 aaKnown RBP21.07■□□□□ 0.96
COL9A3-210ENST00000472880 EML3Q32P44 896 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 NAIF1Q69YI7 327 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-210ENST00000472880 ATL3Q6DD88 541 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 C12orf56Q8IXR9 622 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 CD101Q93033 1021 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 SYAP1Q96A49 352 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-210ENST00000472880 TTLL2Q9BWV7 592 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 ELOVL4Q9GZR5 314 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 DNAH14Q0VDD8 3507 aa21.07■□□□□ 0.96
COL9A3-210ENST00000472880 CCDC163A0A0D9SF12 145 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 RPP40O75818 363 aaKnown RBP21.06■□□□□ 0.96
COL9A3-210ENST00000472880 NFATC1O95644 943 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 STAU1O95793 577 aaKnown RBP21.06■□□□□ 0.96
COL9A3-210ENST00000472880 FAM163BP0C2L3 166 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 ATICP31939 592 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 NOP14P78316 857 aaKnown RBP21.06■□□□□ 0.96
COL9A3-210ENST00000472880 CSRP2Q16527 193 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 PRR23CQ6ZRP0 262 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 GOLGA5Q8TBA6 731 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 NETO1Q8TDF5 533 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 GAB3Q8WWW8 586 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 C8orf48Q96LL4 319 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 FBRSL1Q9HCM7 1045 aaKnown RBP21.06■□□□□ 0.96
COL9A3-210ENST00000472880 NXF1Q9UBU9 619 aaKnown RBP21.06■□□□□ 0.96
COL9A3-210ENST00000472880 CFAP45Q9UL16 551 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 NME7Q9Y5B8 376 aa21.06■□□□□ 0.96
COL9A3-210ENST00000472880 A8MXQ7 604 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 FOXD2O60548 495 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-210ENST00000472880 CCDC192P0DO97 292 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 PTPN1P18031 435 aaKnown RBP21.05■□□□□ 0.96
COL9A3-210ENST00000472880 PPP3CCP48454 512 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 MYL6P60660 151 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 BIRC3Q13489 604 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 GRAMD1CQ8IYS0 662 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 CAMKK1Q8N5S9 505 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 B3GALNT2Q8NCR0 500 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 RPLP0P6Q8NHW5 317 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 ZNF516Q92618 1163 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 ACDQ96AP0 544 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 DPEP3Q9H4B8 488 aa21.05■□□□□ 0.96
COL9A3-210ENST00000472880 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-210ENST00000472880 ABL1P00519 1130 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 PSMD2Q13200 908 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 ZNF699Q32M78 642 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 TDRD10Q5VZ19 366 aaKnown RBP21.04■□□□□ 0.96
COL9A3-210ENST00000472880 CACNA2D4Q7Z3S7 1137 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 SLITRK1Q96PX8 696 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 HHIPQ96QV1 700 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 ZNF518BQ9C0D4 1074 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 GZF1Q9H116 711 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-210ENST00000472880 XYLT2Q9H1B5 865 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 EXOC1Q9NV70 894 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 SERTAD1Q9UHV2 236 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 ATP8B3O60423 1300 aa21.04■□□□□ 0.96
COL9A3-210ENST00000472880 DCDC2BA2VCK2 349 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 ZNF840PA6NDX5 716 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 LEFTY2O00292 366 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 SLFN14P0C7P3 912 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 CASP4P49662 377 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 AP3M2P53677 418 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 DNM1Q05193 864 aaKnown RBP21.03■□□□□ 0.96
COL9A3-210ENST00000472880 IFRD2Q12894 506 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-210ENST00000472880 CCDC26Q8TAB7 109 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 LINC00597Q9H2U6 94 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 KIAA1549LQ6ZVL6 1849 aa21.03■□□□□ 0.96
COL9A3-210ENST00000472880 AKAP3O75969 853 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 CACNA2D1P54289 1103 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 SLC7A9P82251 487 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 TAF10Q12962 218 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 PKP1Q13835 747 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 ZNF667Q5HYK9 610 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 SYT13Q7L8C5 426 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 EZH1Q92800 747 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-210ENST00000472880 LOXL4Q96JB6 756 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 B3GNT5Q9BYG0 378 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms