RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 C8orf37Q96NL8 207 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 SARS2Q9NP81 518 aaKnown RBP13.77□□□□□ -0.2
COL6A3-209ENST00000472056 HEY2Q9UBP5 337 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 L1RE1Q9UN81 338 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 LCA5LO95447 670 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 KYAT3Q6YP21 454 aaKnown RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 DNAJC10Q8IXB1 793 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 AVENQ9NQS1 362 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 KIAA1257Q9ULG3 409 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 SPATA2Q9UM82 520 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 FHOD1Q9Y613 1164 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 LSM8O95777 96 aaKnown RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 IREB2P48200 963 aaKnown RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 ITGA8P53708 1063 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 DLG4P78352 724 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 SYTL3Q4VX76 610 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 USP39Q53GS9 565 aaKnown RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 TMEM63BQ5T3F8 832 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 IZUMO2Q6UXV1 221 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 RNFT2Q96EX2 444 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 GSTK1Q9Y2Q3 226 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 ACTL7BQ9Y614 415 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 ZMYM2Q9UBW7 1377 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 CLTCL1P53675 1640 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 PPEF1O14829 653 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 MPOP05164 745 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 HIRAP54198 1017 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 RBP5P82980 135 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 SWT1Q5T5J6 900 aaKnown RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 EXOC3L1Q86VI1 746 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 WDR36Q8NI36 951 aaKnown RBP13.77□□□□□ -0.21
COL6A3-209ENST00000472056 FAM81AQ8TBF8 368 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 ZNF302Q9NR11 478 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 NCK2O43639 380 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 PGK2P07205 417 aa13.77□□□□□ -0.21
COL6A3-209ENST00000472056 FAM220BPB1ANY3 271 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 TUBA3CQ13748 450 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 VEPH1Q14D04 833 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 MB21D2Q8IYB1 491 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 KIF2BQ8N4N8 673 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 PIK3C3Q8NEB9 887 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 EXD1Q8NHP7 514 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 MIEF2Q96C03 454 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 L3MBTL3Q96JM7 780 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 UBP1Q9NZI7 540 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 DAPK2Q9UIK4 370 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 DBR1Q9UK59 544 aaKnown RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 LOXHD1Q8IVV2 1947 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 HEATR9A2RTY3 570 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 SUPT3HB4E1H0 165 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CYP51A1Q16850 503 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 STK32AQ8WU08 396 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 FAM213AQ9BRX8 229 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 LATS2Q9NRM7 1088 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 POTEMA6NI47 508 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 HNMTP50135 292 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 DNAJC3Q13217 504 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 TIGD7Q6NT04 549 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 POTEHQ6S545 545 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 POTEGQ6S5H5 508 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 SHC4Q6S5L8 630 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 EIF2AK1Q9BQI3 630 aaKnown RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CD274Q9NZQ7 290 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 PRKCQQ04759 706 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 RFX8Q6ZV50 586 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 TAS2R42Q7RTR8 314 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 ARHGEF19Q8IW93 802 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 C1orf131Q8NDD1 294 aaKnown RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 Q96MT0 163 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 MBD5Q9P267 1494 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 PABPC1P11940 636 aaKnown RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 TRAF3Q13114 568 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 NAIF1Q69YI7 327 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 BICRALQ6AI39 1079 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 ZBTB33Q86T24 672 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 MS4A14Q96JA4 679 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 ELMO2Q96JJ3 720 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 DDX20Q9UHI6 824 aaKnown RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 RAB21Q9UL25 225 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 ZBTB1Q9Y2K1 713 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CAPZA2P47755 286 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 KLHL17Q6TDP4 642 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CCDC81Q6ZN84 652 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CAMK1DQ8IU85 385 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 NCOA3Q9Y6Q9 1424 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 DFFAO00273 331 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 LLGL1Q15334 1064 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 RDM1Q8NG50 284 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 MAGEB10Q96LZ2 347 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 ACAD9Q9H845 621 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CD248Q9HCU0 757 aa13.76□□□□□ -0.21
COL6A3-209ENST00000472056 CCDC59Q9P031 241 aaKnown RBP13.76□□□□□ -0.21
COL6A3-209ENST00000472056 PHGDHO43175 533 aaKnown RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ZNF135P52742 658 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 NR1H2P55055 460 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ANKRD40Q6AI12 368 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 NARS2Q96I59 477 aaKnown RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 CHD2O14647 1828 aaKnown RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ITGAXP20702 1163 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 TGM2P21980 687 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms