RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C16orf70Q9BSU1 422 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 CDHR5Q9HBB8 845 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 TRIM33Q9UPN9 1127 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 USP15Q9Y4E8 981 aaPredicted RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 RBP3P10745 1247 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 TFE3P19532 575 aaPredicted RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 TAC1P20366 129 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 HADHQ16836 314 aaKnown RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 CCDC142Q17RM4 750 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 ZC3H12AQ5D1E8 599 aaKnown RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 CYP4V2Q6ZWL3 525 aaPredicted RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 POLNQ7Z5Q5 900 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 RXFP2Q8WXD0 754 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 ZMAT2Q96NC0 199 aaKnown RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 TRABDQ9H4I3 376 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 PCDH9Q9HC56 1237 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 DPP3Q9NY33 737 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 NKIRAS1Q9NYS0 192 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 SCN1AP35498 2009 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 IL18RAPO95256 599 aa20■□□□□ 0.79
VIM-203ENST00000469543 TRUB2O95900 331 aaKnown RBP20■□□□□ 0.79
VIM-203ENST00000469543 OAS1P00973 400 aaKnown RBP20■□□□□ 0.79
VIM-203ENST00000469543 PFKMP08237 780 aa20■□□□□ 0.79
VIM-203ENST00000469543 KRT7P08729 469 aa20■□□□□ 0.79
VIM-203ENST00000469543 PDGFRAP16234 1089 aa20■□□□□ 0.79
VIM-203ENST00000469543 SLC26A2P50443 739 aa20■□□□□ 0.79
VIM-203ENST00000469543 CDH6P55285 790 aa20■□□□□ 0.79
VIM-203ENST00000469543 EIF3EP60228 445 aaKnown RBP20■□□□□ 0.79
VIM-203ENST00000469543 ITIH4Q14624 930 aa20■□□□□ 0.79
VIM-203ENST00000469543 TMEM132DQ14C87 1099 aa20■□□□□ 0.79
VIM-203ENST00000469543 SLC1A5Q15758 541 aa20■□□□□ 0.79
VIM-203ENST00000469543 BBS9Q3SYG4 887 aa20■□□□□ 0.79
VIM-203ENST00000469543 PMF1Q6P1K2 205 aa20■□□□□ 0.79
VIM-203ENST00000469543 FAM183BPQ6ZVS7 135 aa20■□□□□ 0.79
VIM-203ENST00000469543 ACOT1Q86TX2 421 aa20■□□□□ 0.79
VIM-203ENST00000469543 ACTR5Q9H9F9 607 aaPredicted RBP20■□□□□ 0.79
VIM-203ENST00000469543 FAM47DPA6NHR8 397 aa20■□□□□ 0.79
VIM-203ENST00000469543 H3BRB1 525 aa20■□□□□ 0.79
VIM-203ENST00000469543 RNF8O76064 485 aa20■□□□□ 0.79
VIM-203ENST00000469543 OSBPP22059 807 aa20■□□□□ 0.79
VIM-203ENST00000469543 PPIL2Q13356 520 aa20■□□□□ 0.79
VIM-203ENST00000469543 MARCH8Q5T0T0 291 aa20■□□□□ 0.79
VIM-203ENST00000469543 PPP1R26Q5T8A7 1209 aaPredicted RBP20■□□□□ 0.79
VIM-203ENST00000469543 ICE2Q659A1 982 aa20■□□□□ 0.79
VIM-203ENST00000469543 BBS12Q6ZW61 710 aa20■□□□□ 0.79
VIM-203ENST00000469543 CENPUQ71F23 418 aa20■□□□□ 0.79
VIM-203ENST00000469543 FAM228AQ86W67 206 aa20■□□□□ 0.79
VIM-203ENST00000469543 KIF2BQ8N4N8 673 aa20■□□□□ 0.79
VIM-203ENST00000469543 FBXO36Q8NEA4 188 aa20■□□□□ 0.79
VIM-203ENST00000469543 PYROXD1Q8WU10 500 aa20■□□□□ 0.79
VIM-203ENST00000469543 MRPL45Q9BRJ2 306 aaKnown RBP20■□□□□ 0.79
VIM-203ENST00000469543 FAM49AQ9H0Q0 323 aaPredicted RBP20■□□□□ 0.79
VIM-203ENST00000469543 TUT1Q9H6E5 874 aaKnown RBP20■□□□□ 0.79
VIM-203ENST00000469543 WDR91A4D1P6 747 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 ADCY6O43306 1168 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 TSPAN1O60635 241 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 FAXCQ5TGI0 409 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 ARHGEF18Q6ZSZ5 1173 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 NAT8LQ8N9F0 302 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 CMASQ8NFW8 434 aaPredicted RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 MCRS1Q96EZ8 462 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 KIF12Q96FN5 646 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 MROH8Q9H579 483 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 SETD4Q9NVD3 440 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 RABGEF1Q9UJ41 708 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 KRT4P19013 534 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 ATXN1P54253 815 aaKnown RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 KCNJ2P63252 427 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 MTHFD1LQ6UB35 978 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 SPATA21Q7Z572 469 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 MIS12Q9H081 205 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 UBN1Q9NPG3 1134 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 XPO7Q9UIA9 1087 aaKnown RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 GJD2Q9UKL4 321 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 SLC12A4Q9UP95 1085 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 HEY1Q9Y5J3 304 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 SNX9Q9Y5X1 595 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 NR2E3Q9Y5X4 410 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 GABBR2O75899 941 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 PTPN7P35236 360 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 ZNF268Q14587 947 aaPredicted RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 CA9Q16790 459 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 EXOC8Q8IYI6 725 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 CCDC63Q8NA47 563 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 CCHCR1Q8TD31 782 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 FBF1Q8TES7 1133 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 C18orf25Q96B23 403 aaPredicted RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 ACAP3Q96P50 834 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 PITPNM3Q9BZ71 974 aa19.99■□□□□ 0.79
VIM-203ENST00000469543 NSRP1Q9H0G5 558 aaKnown RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 ALG13Q9NP73 1137 aaKnown RBP19.99■□□□□ 0.79
VIM-203ENST00000469543 ASMTLO95671 621 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 MCF2P10911 925 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 CA4P22748 312 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 ANKLE1Q8NAG6 615 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 NGRNQ9NPE2 291 aaKnown RBP19.98■□□□□ 0.79
VIM-203ENST00000469543 SNTG2Q9NY99 539 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 CHMP2BQ9UQN3 213 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 PPME1Q9Y570 386 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 SNAI1O95863 264 aaPredicted RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms