RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 B3GALNT2Q8NCR0 500 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 OR6B3Q8NGW1 331 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 TMC2Q8TDI7 906 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 ATRIPQ8WXE1 791 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 EZH1Q92800 747 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-211ENST00000467464 SNX25Q9H3E2 840 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 FBRSL1Q9HCM7 1045 aaKnown RBP12.76□□□□□ -0.37
PTPRF-211ENST00000467464 TRPC7Q9HCX4 862 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 NXF1Q9UBU9 619 aaKnown RBP12.76□□□□□ -0.37
PTPRF-211ENST00000467464 TCHHQ07283 1943 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 CACNA1IQ9P0X4 2223 aa12.76□□□□□ -0.37
PTPRF-211ENST00000467464 TRAV19A0A0A6YYK7 116 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 ZNF840PA6NDX5 716 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 TRIM66O15016 1216 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 OBSL1O75147 1896 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 USP17L7P0C7H9 530 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 GRIK1P39086 918 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 RAP1GAPP47736 663 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 AP3M2P53677 418 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 MCCD1P59942 119 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-211ENST00000467464 TRPC3Q13507 836 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 NCOA4Q13772 614 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 PDGFRLQ15198 375 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 NFIL3Q16649 462 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 EML3Q32P44 896 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 KRBA2Q6ZNG9 492 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 KIAA2013Q8IYS2 634 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 SYNPOQ8N3V7 929 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 SH3RF2Q8TEC5 729 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 OSCP1Q8WVF1 389 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 RMDN1Q96DB5 314 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 HMGXB4Q9UGU5 601 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 ARHGAP26Q9UNA1 814 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 WNT6Q9Y6F9 365 aa12.75□□□□□ -0.37
PTPRF-211ENST00000467464 A8MXQ7 604 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 CHURC1-FNTBB4DL54 471 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 TNFRSF10BO14763 440 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 MAPK13O15264 365 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 OAS1P00973 400 aaKnown RBP12.74□□□□□ -0.37
PTPRF-211ENST00000467464 CKMP06732 381 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 HOXA6P31267 233 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 GJA4P35212 333 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 FNTBP49356 437 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 BIRC3Q13489 604 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 GAB4Q2WGN9 574 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 ZNF699Q32M78 642 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 SCARA5Q6ZMJ2 495 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 SV2AQ7L0J3 742 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 FAM35AQ86V20 835 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 FSIP1Q8NA03 581 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 ELOVL4Q9GZR5 314 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 RNF38Q9H0F5 515 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 ECT2Q9H8V3 914 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 GDPD2Q9HCC8 539 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 OTOGLQ3ZCN5 2332 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 F5P12259 2224 aa12.74□□□□□ -0.37
PTPRF-211ENST00000467464 RIF1Q5UIP0 2472 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 HRO43593 1189 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 PHACTR2O75167 634 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 AKAP3O75969 853 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ASS1P00966 412 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 EGFP01133 1207 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 CHRM1P11229 460 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 PFKLP17858 780 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ANXA13P27216 316 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ASPAP45381 313 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ID4P47928 161 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 NRLP54845 237 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 SLC7A9P82251 487 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 TAF10Q12962 218 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 SRSF5Q13243 272 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 KCNB1Q14721 858 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ZNF667Q5HYK9 610 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 SPOPLQ6IQ16 392 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 FUKQ8N0W3 1084 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 GUF1Q8N442 669 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ZMIZ2Q8NF64 920 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 ZFRQ96KR1 1074 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 KCNK16Q96T55 309 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 SCAND2PQ9GZW5 306 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 LINC00597Q9H2U6 94 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 APOBEC3GQ9HC16 384 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 PARD6AQ9NPB6 346 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 POLR3BQ9NW08 1133 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 DUS2Q9NX74 493 aaKnown RBP12.73□□□□□ -0.37
PTPRF-211ENST00000467464 IL37Q9NZH6 218 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 TRPM5Q9NZQ8 1165 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 FAM186AA6NE01 2351 aa12.73□□□□□ -0.37
PTPRF-211ENST00000467464 FAM92AA1XBS5 289 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 LEFTY2O00292 366 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 IKBKBO14920 756 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 ZNF202O95125 648 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 HLA-DRAP01903 254 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 TRIM49P0CI25 452 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 TRIM49CP0CI26 452 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 HDCP19113 662 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 PGFP49763 221 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 GALK1P51570 392 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 PPP3CAQ08209 521 aa12.72□□□□□ -0.37
PTPRF-211ENST00000467464 GRSF1Q12849 480 aaKnown RBP eCLIP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms