RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 ITGB3P05106 788 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 EIF2S1P05198 315 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 RPS7P62081 194 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 GPAT2Q6NUI2 795 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 IFNEQ86WN2 208 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 INPP5DQ92835 1189 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 RPRD1AQ96P16 312 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 EHD4Q9H223 541 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 FBXL21Q9UKT6 434 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 PCNAP12004 261 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 TRIM71Q2Q1W2 868 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 TIGD7Q6NT04 549 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 C3orf67Q6ZVT6 689 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 P3H2Q8IVL5 708 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 CYFIP2Q96F07 1278 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 NLNQ9BYT8 704 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 ASCC2Q9H1I8 757 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 PPCSQ9HAB8 311 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 IL1RL2Q9HB29 575 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 KRT84Q9NSB2 600 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 SYBUQ9NX95 663 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 PNMA8BQ9ULN7 279 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 CHMP2BQ9UQN3 213 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 TCP11X1B4DZS4 312 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 PSMD12O00232 456 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 KLHL2O95198 593 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 WEE2P0C1S8 567 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 ITIH2P19823 946 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 PTGER2P43116 358 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 OXCT1P55809 520 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 PWP1Q13610 501 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 LUZP2Q86TE4 346 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 GMCL1P1Q8NEA9 526 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 BLOC1S5Q8TDH9 187 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 DEPDC7Q96QD5 511 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 NIF3L1Q9GZT8 377 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 JMJD4Q9H9V9 463 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 STARD7Q9NQZ5 370 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 THG1LQ9NWX6 298 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 KLK14Q9P0G3 267 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 AMACRQ9UHK6 382 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 TTC26A0AVF1 554 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 NKRFO15226 690 aaKnown RBP eCLIP9.03□□□□□ -0.96
HPS4-209ENST00000466781 VPS26AO75436 327 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 AGTP01019 485 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 RRM2P31350 389 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 HIRAP54198 1017 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 PREPLQ4J6C6 727 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 ARHGAP17Q68EM7 881 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 TRAPPC11Q7Z392 1133 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 ITIH5Q86UX2 942 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 CYP4Z1Q86W10 505 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 ZNF677Q86XU0 584 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 RIN3Q8TB24 985 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 KCNK16Q96T55 309 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 SMAD5Q99717 465 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 SALL1Q9NSC2 1324 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 SNTNA6NMZ2 147 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 FDFT1P37268 417 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 CSTF3Q12996 717 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 BYSLQ13895 437 aaKnown RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 CLEC16AQ2KHT3 1053 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 MYO1HQ8N1T3 1032 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 SPATA18Q8TC71 538 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 GPRASP2Q96D09 838 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 RBM15Q96T37 977 aaKnown RBP eCLIP9.03□□□□□ -0.962e-6■■■■□ 23.7
HPS4-209ENST00000466781 ALDH8A1Q9H2A2 487 aaPredicted RBP9.03□□□□□ -0.96
HPS4-209ENST00000466781 LNPEPQ9UIQ6 1025 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 DSEQ9UL01 958 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 MYPNQ86TC9 1320 aa9.03□□□□□ -0.96
HPS4-209ENST00000466781 TRPC5OSA6NMA1 111 aa9.02□□□□□ -0.96
HPS4-209ENST00000466781 RNF103O00237 685 aa9.02□□□□□ -0.96
HPS4-209ENST00000466781 P4HA2O15460 535 aa9.02□□□□□ -0.96
HPS4-209ENST00000466781 GAS2O43903 313 aaKnown RBP9.02□□□□□ -0.96
HPS4-209ENST00000466781 ZC3H11AO75152 810 aaKnown RBP eCLIP9.02□□□□□ -0.96
HPS4-209ENST00000466781 PNMA6AP0CW24 399 aaPredicted RBP9.02□□□□□ -0.96
HPS4-209ENST00000466781 GSTA3Q16772 222 aa9.02□□□□□ -0.96
HPS4-209ENST00000466781 ZNF544Q6NX49 715 aa9.02□□□□□ -0.96
HPS4-209ENST00000466781 SKA1Q96BD8 255 aa9.02□□□□□ -0.96
HPS4-209ENST00000466781 SMAPO00193 183 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 AP1G2O75843 785 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 YWHAQP27348 245 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 NUP62P37198 522 aaPredicted RBP9.02□□□□□ -0.97
HPS4-209ENST00000466781 RPL10AP62906 217 aaKnown RBP9.02□□□□□ -0.97
HPS4-209ENST00000466781 ARID5BQ14865 1188 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 FAM83EQ2M2I3 478 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 ICE2Q659A1 982 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 PARP9Q8IXQ6 854 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 FMR1NBQ8N0W7 255 aaPredicted RBP9.02□□□□□ -0.97
HPS4-209ENST00000466781 EME1Q96AY2 570 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 M0QYT0 321 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 AIM2O14862 343 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 CYP2C8P10632 490 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 TNNI3P19429 210 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 AVPR1AP37288 418 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 YWHAZP63104 245 aaKnown RBP9.02□□□□□ -0.97
HPS4-209ENST00000466781 STARD3Q14849 445 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 SHROOM1Q2M3G4 852 aaPredicted RBP9.02□□□□□ -0.97
HPS4-209ENST00000466781 SMTNL2Q2TAL5 461 aa9.02□□□□□ -0.97
HPS4-209ENST00000466781 CTXN3Q4LDR2 81 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms